LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g02734	ATGGGTGTTTTCACTTTCGAGGACGAGAATGTCTCCCCAGTGGCACCAGCTAAACTATACAAAGCTGTTGCAAAGGATTCCGACACCATCGTCCCAAAGGTAGTAGAGGCCATTCAGAGTATTGAAATCGTTGAAGGTAATGGAGGCCCCGGAACCATCAAGAAGATCACGGTTGTGGAAGGTGGAAAAAGCATCTACGTGCTGCACAAAGTTGAAGAAATCGACGAGGAAAACTTGGGATACAAATACAGCATAGTGGGGGGGAGTGGATTAGAGGAGATTTTGGAGAAAGTGACATTCGAAACAAAGTTGTTTCCAGGGCCCAATGGTGGGTCATTGGGGAAGGTGAGTGTGACTTACCACACCAAAGGAGACGCAGCCCCACCGGAAGAGGTTCTTCAGAGCAACAAGGTCAAGGGAATTGCACTTTTCAAGGCTGTTGAAGGCTTCGTTTTGGCAAACCCTGATTACTAG	474	0.4768	MGVFTFEDENVSPVAPAKLYKAVAKDSDTIVPKVVEAIQSIEIVEGNGGPGTIKKITVVEGGKSIYVLHKVEEIDEENLGYKYSIVGGSGLEEILEKVTFETKLFPGPNGGSLGKVSVTYHTKGDAAPPEEVLQSNKVKGIALFKAVEGFVLANPDY	157

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g02734	157	PANTHER	-	1	157	-	-
	Cca11g02734	157	CDD	Bet_v1-like	4	148	-	-
	Cca11g02734	157	PRINTS	Major pollen allergen Bet V1 signature	3	23	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Cca11g02734	157	PRINTS	Major pollen allergen Bet V1 signature	26	36	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Cca11g02734	157	PRINTS	Major pollen allergen Bet V1 signature	49	58	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Cca11g02734	157	PRINTS	Major pollen allergen Bet V1 signature	65	84	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Cca11g02734	157	PRINTS	Major pollen allergen Bet V1 signature	84	97	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Cca11g02734	157	PRINTS	Major pollen allergen Bet V1 signature	109	125	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Cca11g02734	157	PRINTS	Major pollen allergen Bet V1 signature	143	153	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Cca11g02734	157	ProSitePatterns	Pathogenesis-related proteins Bet v I family signature.	88	120	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Cca11g02734	157	Pfam	Pathogenesis-related protein Bet v 1 family	1	153	IPR000916	GO:0006952
	Cca11g02734	157	PANTHER	ABA-RESPONSIVE PROTEIN	1	157	-	-
	Cca11g02734	157	SUPERFAMILY	Bet v1-like	2	157	-	-
	Cca11g02734	157	Gene3D	-	2	157	IPR023393	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g02734	Cca-Chr11	54725209	54726240	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g02734	-		-	gmx:100500525	224.172

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca11g02734	11	54725209	54726240	Cca11g02734	11	54725209	54726240	ECH