Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02722 ATGACCATCGACTTGGATTCGGTCGCTCGCAAAATCGAGGTTGATAACCGCATTCCCCTTCGCTATTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAGGTATCTACCGGGAGGAGAATAATGTAGTTGACTTGTATATCATCCTCCTTAGATTTATAAGTTTGGTTTCTGAGACTATACCATATCATCGAGATTATCAAGTTTCACTGGCCAGTGAAAGGGCAGCATATAAGAAGAGGTCGCGAGTTGCACTAAATGAGCTTGAATCTTTGAAGCCTGAATTTAAACGCCGGGTGGAAAAATTGAATGAGTCACATGTAAAAGCTCCATTGCCTCAAGAAAATGGCTCTAATAAGGCCTTGCAAAGTTCAGTGAATTCTTCTTTGGAATGGCCGGCTGTTAATAAAAGTTATAACTTAAGCATGGATTTTAAACAGCCTGCTGGATTGGGTTCAAACACTTCATGGAATTACAATAATATGTTATCTTCAAATTCCAGGCCTATTGACAAGCAGTTTCAGAAACTATCTCTCAGTCTACCCCCTCCAAATAAGGATACTTTGTCCAGACATTCATTTTTAGGACCAAATGGTCTTCGTGGCCAATGGCTTGGACCTAGTGCAGAAATAAAGGTTCAATATCCAAGCAGTAGTGATCTCACACATGCCAAGGATTCAAGCCTGAATCAGGCTGGGCAATATGATCTTGTGGCAATTAAAGATGGTGATCAAGAACCAGTTACATCCACAATGGACTCGGTTCTCTCCTTGGACGATGGAAGATGGTTGAATCCTGCTGTTGAGTCCTGTTCTCCTGTTGTTACTGAATCAAGGGAGGAACCTTTACAATTGCTCAACATCAAGCAACCTTTGCCTCCTCCTGTTCTTGCTCAGGTTTACCCAGAATGTGCCCCTATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCAGCTAAATCTTCTAATGATTCTGGAGTTGGTCCAACTACATATCAACACCTTCATATTCCTGTCAAAATGATGGAAGACTTTTTGAGATTAGCTTCAGCAAACACACGGAAGAACTTAGAGACATGTGGTGTTCTTGCTGGGTCCCTGAAAAAAAGGGTATTCCATATCACGACACTTATAATTCCAAAGCAGGAATCAACTTCAGACTCGTGTTCAACATTGAATGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTAGGTTGGATACATACACATCCGTCACAGACTTGTTTCATGTCTTCCGTGGATCTGCACACTCATTACTCATATCAGATCATGTTACCGGAGGCAATTGCTATTGTCATGGCCCCTACAGATACTGCAAGTCCACATGGCATATTTCATCTGTCTGATCCGGGTGGTGTGTCTGTAATTCGTAACTGTCAACAACGTGGATTTCATCCGCATGAAGAGCCTTCGGATGGAAGTCCAATATATGAGCACTGCTCTCATGTCTATATGAATGCTAACTTGAAGTTCGATGTTGTTGACCTTCGAGATCGATGA 1539 0.4204 MTIDLDSVARKIEVDNRIPLRYYYRIADNLLKQAGIYREENNVVDLYIILLRFISLVSETIPYHRDYQVSLASERAAYKKRSRVALNELESLKPEFKRRVEKLNESHVKAPLPQENGSNKALQSSVNSSLEWPAVNKSYNLSMDFKQPAGLGSNTSWNYNNMLSSNSRPIDKQFQKLSLSLPPPNKDTLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSSDLTHAKDSSLNQAGQYDLVAIKDGDQEPVTSTMDSVLSLDDGRWLNPAVESCSPVVTESREEPLQLLNIKQPLPPPVLAQVYPECAPIPPSKVADPRPGPAKSSNDSGVGPTTYQHLHIPVKMMEDFLRLASANTRKNLETCGVLAGSLKKRVFHITTLIIPKQESTSDSCSTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTASPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANLKFDVVDLRDR 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02722 512 ProSiteProfiles MPN domain profile. 336 466 IPR037518 -
Cca11g02722 512 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 332 439 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca11g02722 512 Gene3D - 2 126 - -
Cca11g02722 512 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 3 510 - -
Cca11g02722 512 SMART pad1_6 335 463 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca11g02722 512 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Cca11g02722 512 MobiDBLite consensus disorder prediction 308 331 - -
Cca11g02722 512 SUPERFAMILY JAB1/MPN domain 335 466 - -
Cca11g02722 512 CDD MPN_AMSH_like 333 510 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Cca11g02722 512 PANTHER AMSH-LIKE PROTEASE 3 510 - -
Cca11g02722 512 Coils Coil 86 106 - -
Cca11g02722 512 Gene3D Cytidine Deaminase, domain 2 320 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02722 Cca-Chr11 54592661 54600750 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02722 K11866 - gmx:100812784 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02722 11 54592661 54600750 Cca11g02722 11 54592661 54600750 ECH