Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02713 atgcactcctcgctctctctctcgttctccgccacctcctcctccgccgccaccgtctccAGATCACGCTACTCCTTCCACGCCCCCGCCGCCGTGCCTCTCAATCTCCGCTTCTGCGGCTTGCGGCGTGAGGCTTTTGGCTCAGGTCTCGCCGCCTCTCTCAACCGCAACCTCCCTCGCCGCCCTCACTCCGCCGCAGTCTCGGCCGCGCTCTCCAACAATGGCAGCACTCCCAAATCCTTCGACTACGATTTGTTGATCATCGGCGCCGGCGTTGGCGGCCATGGCGCAGCGCTTCATGCCGTTGAGAAGGGTTTGAAAACAGCGATTGTGGAAGGAGATGTGGTGGGCGGGACGTGTGTGAACAGAGGCTGTGTTCCTTCGAAAGCTCTTTTGGCCGTGAGTGGTCGTATGCGAGAACTAAAGAGCGATCATCACTTGAAGTCCTTTGGCTTACAGGTTTCTGCTGCAGGGTATGACAGACAAGGGGTCGCTGATCATGCTAATAATCTTGCTTCGAAAATCCGTAATAACTTGACCAACTCGATGAAAGCGCTTGGAGTGGACATACTTACCGGTTTTGGGACTATTTTGGGTCCTCAAAAGGTGAAAGTTGGCTCTTCTAACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCTTTTGTTCCTAAGGGAATTGAAATTGACGGGAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGTCTGTTCCTGATTGGATAGCAATTGTAGGAAGTGGATATATTGGCCTTGAATTCAGTGATGTATATACAGCACTTGGAAGTGAGGTTACTTTTATAGAAGCTTTAGATCAACTTATGCCTGGTTTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGATCACGCCTGCAAGGGATGGAAAACCTGTCTTGATTGAACTTATTGATGCAAAAACCAAGGAGCCAAAAGACACTCTGGAGGTGGATGCTGCACTAATAGCTACTGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAATATTGATGTGGTAACGCAGCGTGGTTTTGTTCCTGTGGATGAGCGCATGCGAGTAATTGATGCAAATGGAAAGCTGGTGCCTCATTTATACTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGTGGTTGAACAAGTCACTGGAAAAGATCACGTGCTCAATCATTTAAGTATCCCAGCTGCTTGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGAGAAAGGTGAAAAAGAGGGGTTTGAAGTAAGTGTTGCCAAAACAAGTTTTAAAGCCAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGGCTTGCCAAGTTGATATACAGACCTGACAATGGAGAGATACTGGGGGTTCATATTTTTGGTTTGCATGCAGCAGATCTTATCCATGAAGCATCCAACGCAATAGCATTAGGGACGCGTATTCAGGACATCAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGGTTAAAGCGCGAGCTTCTAGCCCAGTAAGTGAACCCGTTGCAGTCTAA 1701 0.4521 MHSSLSLSFSATSSSAATVSRSRYSFHAPAAVPLNLRFCGLRREAFGSGLAASLNRNLPRRPHSAAVSAALSNNGSTPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSFGLQVSAAGYDRQGVADHANNLASKIRNNLTNSMKALGVDILTGFGTILGPQKVKVGSSNKIVTAKDIIIATGSVPFVPKGIEIDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFATKITPARDGKPVLIELIDAKTKEPKDTLEVDAALIATGRAPFTQGLGLENIDVVTQRGFVPVDERMRVIDANGKLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGKDHVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVKARASSPVSEPVAV 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02713 566 Pfam Pyridine nucleotide-disulphide oxidoreductase 83 415 IPR023753 GO:0016491
Cca11g02713 566 PRINTS Pyridine nucleotide disulphide reductase class-I signature 84 106 - -
Cca11g02713 566 PRINTS Pyridine nucleotide disulphide reductase class-I signature 116 131 - -
Cca11g02713 566 PRINTS Pyridine nucleotide disulphide reductase class-I signature 217 226 - -
Cca11g02713 566 PRINTS Pyridine nucleotide disulphide reductase class-I signature 253 278 - -
Cca11g02713 566 PRINTS Pyridine nucleotide disulphide reductase class-I signature 347 361 - -
Cca11g02713 566 PRINTS Pyridine nucleotide disulphide reductase class-I signature 395 402 - -
Cca11g02713 566 PRINTS Pyridine nucleotide disulphide reductase class-I signature 430 451 - -
Cca11g02713 566 PRINTS Pyridine nucleotide disulphide reductase class-I signature 499 514 - -
Cca11g02713 566 PRINTS Pyridine nucleotide disulphide reductase class-I signature 521 541 - -
Cca11g02713 566 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 434 545 IPR004099 GO:0045454
Cca11g02713 566 Gene3D - 226 353 IPR036188 -
Cca11g02713 566 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 83 552 IPR006258 GO:0004148|GO:0050660
Cca11g02713 566 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 433 547 IPR016156 GO:0016491|GO:0050660
Cca11g02713 566 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 22 558 - -
Cca11g02713 566 Gene3D - 433 557 IPR016156 GO:0016491|GO:0050660
Cca11g02713 566 Gene3D - 84 416 IPR036188 -
Cca11g02713 566 PANTHER DISULFIDE OXIDOREDUCTASE 22 558 - -
Cca11g02713 566 SUPERFAMILY FAD/NAD(P)-binding domain 70 424 IPR036188 -
Cca11g02713 566 PIRSF Hg-II_reductase_MerA 29 548 IPR001100 GO:0016491
Cca11g02713 566 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 117 127 IPR012999 GO:0016668
Cca11g02713 566 PRINTS FAD-dependent pyridine nucleotide reductase signature 85 104 - -
Cca11g02713 566 PRINTS FAD-dependent pyridine nucleotide reductase signature 214 232 - -
Cca11g02713 566 PRINTS FAD-dependent pyridine nucleotide reductase signature 253 271 - -
Cca11g02713 566 PRINTS FAD-dependent pyridine nucleotide reductase signature 346 362 - -
Cca11g02713 566 PRINTS FAD-dependent pyridine nucleotide reductase signature 380 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02713 Cca-Chr11 54502487 54509080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02713 1 558 Acyl Lipid Metabolism Gene Families AT3G16950 83.245 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02713 K00382 - gmx:100782004 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02713 11 54502487 54509080 Cca11g02713 11 54502487 54509080 ECH