Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02702 ATGGTGGAGAAGCACAACCTCAAGAACCCATCCGTGAAACGGATTCTCCGAGAGGTCAAGGAGATGCAATCAAACCGTTCCGATGACTACATGAGTCTCCCTCTTGAGGAGAATATATTTGAATGGCAATTTGCAATTAGGGGACCTCCTGATAGTGAATTTGAGGGTGGTATTTATCACGGAAGGATCCAGTTGCCTTCAGAATATCCCTTCAAGCCTCCTTCATTTATGTTGCTGACCCCTAGTGGTCGTTTCCAGACGCAAACTAAGATTTGCTTGAGCATATCAAATCATCATCCTGAGCATTGGCAACCGTCATGGAGCGGCAAAACTGCTCTGGTTGCACTAATTGCATTCATGCCCACCAGCCCAAATGGTGCCTTGGGCTCATTAGACTACAAGAAGGAAGAGAGGCGTGCTTTGGCCATTAAATCTCGTGAAGCAACTCCAAGATTTGGGACTCCTGAACGTCAAAGACTGATTGATGAGATACACAAGTATACGCTAAGCAAATCATCTCCTGTTCCACAATGTGGCCACTCAGAAACTTCTGAAGAAGCCTCCAAAACCAAGGAGGCCGAGACTCAGGTTAATTTGAAAATTCCGGAGGCTTTACCTGCAGTAGAGGGGATTCCAGACCAAGCAGGTGACAGAATAGTTGAAGAACAAGAATTCCCTGTCAATGCTAATCCTAACCCTGCAGGAGTTGAGGCTTCGGTGGTGAATCCATCCAGCATCTCAAGCAAGCAGTTGCTCCAAAAGTCAGATGCAAGGTTTCAGAATTTGAAACCAGAGACAAGGGTTCAAAAACCTGATGATCGATTGTTCACACTGGCAGCTATTGGACTTACTATAGCAATTGTGATCCTTTTGCTGAAGAAGTTTGTTAATTCTGAACATGGTGCAGTTTTCATGAATGAATCATAG 927 0.4488 MVEKHNLKNPSVKRILREVKEMQSNRSDDYMSLPLEENIFEWQFAIRGPPDSEFEGGIYHGRIQLPSEYPFKPPSFMLLTPSGRFQTQTKICLSISNHHPEHWQPSWSGKTALVALIAFMPTSPNGALGSLDYKKEERRALAIKSREATPRFGTPERQRLIDEIHKYTLSKSSPVPQCGHSETSEEASKTKEAETQVNLKIPEALPAVEGIPDQAGDRIVEEQEFPVNANPNPAGVEASVVNPSSISSKQLLQKSDARFQNLKPETRVQKPDDRLFTLAAIGLTIAIVILLLKKFVNSEHGAVFMNES 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02702 308 SMART ubc_7 13 173 - -
Cca11g02702 308 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 308 - -
Cca11g02702 308 SUPERFAMILY UBC-like 12 134 IPR016135 -
Cca11g02702 308 Gene3D Ubiquitin Conjugating Enzyme 2 188 IPR016135 -
Cca11g02702 308 MobiDBLite consensus disorder prediction 171 194 - -
Cca11g02702 308 PANTHER BNAC01G21910D PROTEIN 6 308 - -
Cca11g02702 308 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Cca11g02702 308 CDD UBCc 12 147 IPR000608 -
Cca11g02702 308 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02702 Cca-Chr11 54431801 54433737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02702 3 307 Miscellaneous Gene Families AT3G17000 59.937 7.25e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02702 K10578 - gmx:100804054 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02702 11 54431801 54433737 Cca11g02702 11 54431801 54433737 ECH