Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02697 ATGAACGCTCTTCCTTCTTCTTCCTCTTCCACCTTCACTTTCTTCACTCAGTCCAAGAACCCCAACCATCTCTTCAAGCTCACACATAAAGTACCCATTCTACCCCTGCACTCTTCCCCGTGTTGCTCTCTCAGCGACTCGTTCTCCTCGTCGACCACGGTGCTGGACAAAAATGCCCTTTCATCGGAGAAGAGTTCCCGCAATGCAGTTCCGTCGGAAGACTCGAGCTCCGAGGAGGTCCTCGTGGTTCGCCGGCCGGTGACGGAATTTGCCGGCGAAGGCTCCGACGAGGAGGAAGAGGGGAAGGAGGCAGATGACGGCGATGACCAGAAGGGTTCGGCGATCGACGAGGGACTCGCGAGGTTTGCGAAGAAGATGCCGATGTTTGAACCGGAGAGGGTCGAATCCAAAGAGAAGCCCCTCGCGGTGAATTTGGACTTGACGTTGTACAAGGCGAAAGTTTTAGCTAGAAGCTTTCGGTATGAAGAAGCAGAAGCAATACTTCAAAAGTGTATAAGCTATTGGTCGGAAGATGGTCGACCTTACGTGGTACTTGGAAAGATTTTGAGCAGGCAATCCAAAAGAGTCAAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACTCAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTTGAAATGCAAATGGGAAATATCAGGAGAGCAAGACAGTTGTTTGATGCTGCCACGGTTGCTGATAAGAGGCATGTTGCTGCTTGGCATGGATGGGCAGTTCTAGAATTAAAGCAGGGAAATATAAAGAAGGCAAGGGGTCTTCTTGCTAAAGGTCTCCAATATTGCGGACAGAATGAGTACATATACCAAACACTTGCACTGCTTGAAGCTAGAGCAAATAGATTTCAGCAGGCTCGATATTTATTCAATCAGGCCACTAAATGTAATCCTATTAGCTGTGCTAGTTGGCTTGGTTGGGCACAAATGGAGGTGGAACAGGGAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCTAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGTGTATTTGAAGCTAACATGGGCAACATTGACAAGGGAAGAAAACTTTTAAAGATAGGCCATACACTAAATCCGAGGGATGCTGTTCTACTTCAGTCTCTTGCTTTATTAGAATACCAACACACAACTGCAAACCTTGCTCGGGTTTTGTTCAGGAGAGCATCTGAATTGGATCCAAGGCACCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAACTTGAATAAAGCTAGAGAATTATACCAAAAAACTTTATCAATTGATACAAACAGTGAAACTGCTGCCAGGTGTCTCCAGGCTTGGGGTGTTCTGGAGCAGAGGGTTGGCAATCTTTCAGCTGCTCGTAGATTATTTAAATCTTCTTTGAATATTAATTCTCAGAGTTACGTGACATGGATGACTTGGGCATCACTGGAGGAAGATCAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAACCTCTATTTCCAACAGCGCACTGAAGTTGTAGATGATGCTTCATGGGTTATGGGATTCTTAGATATTTTAGACCCAGCCATTGACACTTTAAAGAGACTCCTCAAGCTGAACCCAAATTCGTACAACATGCCACTGGATTCTTTGAGAAATCTTGCCGGAACAAATAAAAACAGAGCTGATTTTTCTAGTgacgaggaggaggaggaggGTGATACAAATGATGAAAGTGACTTTGATGTGGATGCTTTCATTATGGAAAGGCTATCCTTAGATTCGTCCAATCTAGAAGTTCAGTTGGAAAAACCAAAATTTTCTTCCGTGAAGAGAAGTATTTCTCCTAGAAGGATATGGCGATCAAATACTAGATTAGCCAAAGTGACTATAATGTAG 1929 0.4448 MNALPSSSSSTFTFFTQSKNPNHLFKLTHKVPILPLHSSPCCSLSDSFSSSTTVLDKNALSSEKSSRNAVPSEDSSSEEVLVVRRPVTEFAGEGSDEEEEGKEADDGDDQKGSAIDEGLARFAKKMPMFEPERVESKEKPLAVNLDLTLYKAKVLARSFRYEEAEAILQKCISYWSEDGRPYVVLGKILSRQSKRVKAREIYEKGCQATQGENAYIWQCWAVLEMQMGNIRRARQLFDAATVADKRHVAAWHGWAVLELKQGNIKKARGLLAKGLQYCGQNEYIYQTLALLEARANRFQQARYLFNQATKCNPISCASWLGWAQMEVEQGNYRAARKLFEKAVQASPKNRFAWHVWGVFEANMGNIDKGRKLLKIGHTLNPRDAVLLQSLALLEYQHTTANLARVLFRRASELDPRHQPVWFAWGWMEWKEGNLNKARELYQKTLSIDTNSETAARCLQAWGVLEQRVGNLSAARRLFKSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDTLKRLLKLNPNSYNMPLDSLRNLAGTNKNRADFSSDEEEEEGDTNDESDFDVDAFIMERLSLDSSNLEVQLEKPKFSSVKRSISPRRIWRSNTRLAKVTIM 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02697 642 MobiDBLite consensus disorder prediction 57 113 - -
Cca11g02697 642 SMART hat_new_1 398 430 IPR003107 GO:0006396
Cca11g02697 642 SMART hat_new_1 262 294 IPR003107 GO:0006396
Cca11g02697 642 SMART hat_new_1 228 260 IPR003107 GO:0006396
Cca11g02697 642 SMART hat_new_1 432 467 IPR003107 GO:0006396
Cca11g02697 642 SMART hat_new_1 330 362 IPR003107 GO:0006396
Cca11g02697 642 SMART hat_new_1 469 501 IPR003107 GO:0006396
Cca11g02697 642 SMART hat_new_1 296 328 IPR003107 GO:0006396
Cca11g02697 642 SMART hat_new_1 193 226 IPR003107 GO:0006396
Cca11g02697 642 SMART tpr_5 316 349 IPR019734 GO:0005515
Cca11g02697 642 SMART tpr_5 282 315 IPR019734 GO:0005515
Cca11g02697 642 SMART tpr_5 179 212 IPR019734 GO:0005515
Cca11g02697 642 SMART tpr_5 248 281 IPR019734 GO:0005515
Cca11g02697 642 SMART tpr_5 384 417 IPR019734 GO:0005515
Cca11g02697 642 SMART tpr_5 214 247 IPR019734 GO:0005515
Cca11g02697 642 SMART tpr_5 350 383 IPR019734 GO:0005515
Cca11g02697 642 SMART tpr_5 145 178 IPR019734 GO:0005515
Cca11g02697 642 SMART tpr_5 418 451 IPR019734 GO:0005515
Cca11g02697 642 SMART tpr_5 455 488 IPR019734 GO:0005515
Cca11g02697 642 Pfam Tetratricopeptide repeat 318 357 - -
Cca11g02697 642 Pfam Tetratricopeptide repeat 223 273 - -
Cca11g02697 642 ProSiteProfiles TPR repeat profile. 418 451 IPR019734 GO:0005515
Cca11g02697 642 SUPERFAMILY TPR-like 161 400 IPR011990 GO:0005515
Cca11g02697 642 MobiDBLite consensus disorder prediction 57 75 - -
Cca11g02697 642 Gene3D Tetratricopeptide repeat domain 400 577 IPR011990 GO:0005515
Cca11g02697 642 Gene3D Tetratricopeptide repeat domain 147 398 IPR011990 GO:0005515
Cca11g02697 642 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 5 636 IPR044624 GO:0003729|GO:0006397
Cca11g02697 642 ProSiteProfiles TPR repeat profile. 316 349 IPR019734 GO:0005515
Cca11g02697 642 SUPERFAMILY HCP-like 328 552 - -
Cca11g02697 642 MobiDBLite consensus disorder prediction 569 589 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02697 - - gmx:100819232 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02697 11 54387997 54392604 Cca11g02697 11 54387997 54392604 ECH