Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02687 ATGAACAGTGGCAGCGAATTCGCCAACTTCGACGTCGTCACGGACGACTCAGATCACGACTTTCTCGGTTTAAACGACGGACAATGCATCAACAACACAAAGGGCGAAGTTTACCGCACCATCATGAAAGAGTGGAAGATTCTCGAACAAAGCCTACCCGAATCAATCTACGTGCGTGTCTACGAGCAACGCATTGATTTAATGAGGGCCGTGATCGTGGGCGCCGCGGGCACACCGTACCACGATGGTCTCTTTTTCTTCGACATCGCGTTCCCCTCGGATTACCCGAAGCACCCTCCCAAGTTGAATTTCCGCTCGTTcgggcaccggatcaacccgaacctgtacaacacggggaaagtgtgtctgagtttgctgaacacgtggcacgggaggaagagggagctgtgggacccctgcgagtccacgattcttcaggtgttgctctcgatccagggactcgttctgaacgagaaaccgttttataacgagcctggGATTGAGTCGTTCGGTCGTTTTGTTTTCGACGTCGAGACTAGGTCACGTGCCTACAGCGACAACGCCTTTGTCTTCACTCTTGACATCGCTTCTCACCTCCTTCGGAAGCCGCCCAGGAACTTCGAGGATTTCGTGAGTGCTTTTTTTCGCCAGCGTGCGGGCTCGATTATGGAAGCGTGCGACGAGTACATGAACGGGCGCGTGAGGGTTGGCTACttcgggtgcgtgtcgggttcggatttgagttcgagttcgAAGAGTTCCAAGATGTCGAAGATTGAAGTGTCGCAGGGGTTTAGAGAGGCGATGATGGGGGTTGTGCCTCGCCTTGTTCAAGCGTTTCGAGAGAACGGTGCTTCTGTTGTGGACCCGGATTGGAAGTGGGAGGTGTCCCAAAACTTAGTGCAAGTGGAGGAATATGAAGATATCAAGAGTGGAAAATGGAAAGGCAATAAAGGGAGTGTGATGTTCAAGAAGGTTGTGGAGAAGATTAAGAAGGCTTTTAGATGGAAGAAAAATCGTGGAAAGAATAAGAGGAGTGAAGGGGAGATATCGCGGGCTTGA 1062 0.403 MNSGSEFANFDVVTDDSDHDFLGLNDGQCINNTKGEVYRTIMKEWKILEQSLPESIYVRVYEQRIDLMRAVIVGAAGTPYHDGLFFFDIAFPSDYPKHPPKLNFRSFGHRINPNLYNTGKVCLSLLNTWHGRKRELWDPCESTILQVLLSIQGLVLNEKPFYNEPGIESFGRFVFDVETRSRAYSDNAFVFTLDIASHLLRKPPRNFEDFVSAFFRQRAGSIMEACDEYMNGRVRVGYFGCVSGSDLSSSSKSSKMSKIEVSQGFREAMMGVVPRLVQAFRENGASVVDPDWKWEVSQNLVQVEEYEDIKSGKWKGNKGSVMFKKVVEKIKKAFRWKKNRGKNKRSEGEISRA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02687 353 CDD UBCc 38 165 IPR000608 -
Cca11g02687 353 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 38-RELATED 4 295 - -
Cca11g02687 353 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 36 197 IPR000608 -
Cca11g02687 353 SMART ubc_7 39 197 - -
Cca11g02687 353 Gene3D Ubiquitin Conjugating Enzyme 2 275 IPR016135 -
Cca11g02687 353 Pfam Ubiquitin-conjugating enzyme 41 161 IPR000608 -
Cca11g02687 353 SUPERFAMILY UBC-like 36 204 IPR016135 -
Cca11g02687 353 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 4 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02687 Cca-Chr11 54298117 54299515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02687 7 288 Miscellaneous Gene Families AT2G33770 45.583 2.98e-70 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02687 K10581 - gmx:100791343 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02687 11 54298117 54299515 Cca11g02687 11 54298117 54299515 ECH