LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g02682	ATGTGCCCTTCCGGTCGAACCCTCGCCTCCGGTTTCCGACCGGCATTCGACGTCCTCGACGCCGACCGCGACGGAAGAATCAGCCGCGACGACCTCCGCGCCTTCTACGCAGGGCTCCACGGCAGCGGCGGCGGCGAGGAGGCGATCGGGGCAATGATGACGGTGGCCGACACGAACAAGGACGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGGTCGCGGGAAACGCGGAGCCAAGCGCGTGGGGGGCCATGGAGGAGGTTTTCAGGGTTATGGACAAGGACGGAGACGGCAAGCTCAGCCACCGTGACTTGAAGACTTACATGGCCTCCGCGGGGTTTCCGGCCACCGACGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCGACCACACCCCCGCCATGATTCGCTTCGGCGGCGGCGACCAACACGGCGGCGTCACCTTCGATGGTTTGCTTCGTATATTATCGCTGGATTCTTTTGCTGCTTATTGA	630	0.4762	MCPSGRTLASGFRPAFDVLDADRDGRISRDDLRAFYAGLHGSGGGEEAIGAMMTVADTNKDGFVEYEEFERVVAGNAEPSAWGAMEEVFRVMDKDGDGKLSHRDLKTYMASAGFPATDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADHTPAMIRFGGGDQHGGVTFDGLLRILSLDSFAAY	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g02682	209	Gene3D	-	82	120	-	-
	Cca11g02682	209	CDD	EFh	12	74	IPR002048	GO:0005509
	Cca11g02682	209	PANTHER	CALCIUM-BINDING PROTEIN CP1	8	120	-	-
	Cca11g02682	209	PANTHER	CALCIUM-BINDING PROTEIN CP1	175	206	-	-
	Cca11g02682	209	PANTHER	TROPONIN	175	206	-	-
	Cca11g02682	209	PANTHER	TROPONIN	8	120	-	-
	Cca11g02682	209	ProSiteProfiles	EF-hand calcium-binding domain profile.	15	42	IPR002048	GO:0005509
	Cca11g02682	209	ProSitePatterns	EF-hand calcium-binding domain.	57	69	IPR018247	-
	Cca11g02682	209	ProSitePatterns	EF-hand calcium-binding domain.	20	32	IPR018247	-
	Cca11g02682	209	ProSiteProfiles	EF-hand calcium-binding domain profile.	44	79	IPR002048	GO:0005509
	Cca11g02682	209	ProSitePatterns	EF-hand calcium-binding domain.	93	105	IPR018247	-
	Cca11g02682	209	SUPERFAMILY	EF-hand	12	120	IPR011992	-
	Cca11g02682	209	Pfam	EF-hand domain pair	13	72	IPR002048	GO:0005509
	Cca11g02682	209	Pfam	EF hand	85	111	IPR002048	GO:0005509
	Cca11g02682	209	ProSiteProfiles	EF-hand calcium-binding domain profile.	80	115	IPR002048	GO:0005509
	Cca11g02682	209	Gene3D	-	7	81	-	-
	Cca11g02682	209	SMART	efh_1	11	39	IPR002048	GO:0005509
	Cca11g02682	209	SMART	efh_1	48	76	IPR002048	GO:0005509
	Cca11g02682	209	SMART	efh_1	84	112	IPR002048	GO:0005509

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g02682	1	119	EF-hand Containing Proteins	AT5G49480	54.478	3.47e-40	133

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g02682	K02183		-	gmx:100527230	186.808

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca11g02682	11	54248481	54249110	Cca11g02682	11	54248481	54249110	ECH