Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02668 ATGCTTCTCTCCAGTCCCGTTACTCCCGGTCAGGTCTCGTTCTTGCTCGGGATCGTTCTCGTCGTTGTGGCATGGATATACTCGGAGATTTTGCAGTATCTGAAAAACTCTGCCTCGTCCAGAGCTGGGAACTCAGAAATCAATTTAGTTGAAGTGCGAAGTGATGTTGTTAAAGATGAAGACAGAGCAGTTTTATTGGAGGGAGGAGCTCTACAGTCAGGGTCCCCGAAGGCACGGAGCTTAAGTACCTCACCATCAATTATCAGGTTCCTTTTGATGGATGAGTATTTCCTTGTTGAAAACCGTTTGACACTTAGAGCAATGTCCGAATTTGGTCTCATTTTGGCTTACTTTTATTTGTGTGACCGTACCGATTTCTTTGCCTCATCAAAAAAGAGTTACAATAGGGATCTCTTCCTATTTCTCTATTTTCTCCTCATCATAGTTTCGGCAATGACTTCCTTTAAGATACATCATGACAAGTCACCATTGTCTGGGAAATCCATCCTTTACTTAAATAGGCACCAGACTGAAGAATGGAAAGGCTGGATGCAGGTTTTGTTTTTGATGTACCATTACTTTGCTGCATCTGAAATCTACAATGCAATCCGTTTGTTCATTGCTGCATATGTTTGGATGACTGGATTTGGGAACTTCTCATATTATTATGTTCGTAAAGATTTTAGTTTAGCAAGATTTGCACAGATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCTGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTCTTATGGTTTATGGGGCACTTGGTATTTTCAACAAGTATAATGAGATTGGGTCTGTCATTGCTGTAAAAATCATTGCTTGCTTCTTGGTTGTGATATTAGTATGGGAGATACCTGGCGTATTTGAATGGGTTTGGAGCCCATTTACTTTCATGCTCGGTTATACTGACCCAAATGCCAAATCACATGTTTCACGCTTGCATGAATGGCATTTTCGCTCAGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCATATTATCATCCAACTGTTGAACGATGGATGGAGAAATTGGAGGAAGCAGAAGTCAAGCTTAGAATATCAATCAAAGCAGCTGTTGTGCTGATATGCTCATTGGTGGGTTATTTATGGTTTGAGCATATATACAAGATGGACAAGCTTACATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACGGTTTACATATGCTTGCGGAATGTTACACAAAGTTTTCGTAGCTATACACTGACTCTTTTTGCATGGCTTGGGAAGATTACACTGGAGACTTACATCTCCCAGATCCATATCTGGTTAAGGTCAGGTGTTCCAGATGGTCAACCAAAATTGTTGCTTTCCCTGATCCCAGACTACCCAATGTTGAACTTCATGCTTACTACTTCCATCTATGTTGCAGTAAGTAAAAGCACATGCTGGATTGAGATTTTTATGTTGATTGATTCTGATTTAAACATTCTTTGCAGATTTCCTATAGGCTCTTTGACCTGA 1566 0.3997 MLLSSPVTPGQVSFLLGIVLVVVAWIYSEILQYLKNSASSRAGNSEINLVEVRSDVVKDEDRAVLLEGGALQSGSPKARSLSTSPSIIRFLLMDEYFLVENRLTLRAMSEFGLILAYFYLCDRTDFFASSKKSYNRDLFLFLYFLLIIVSAMTSFKIHHDKSPLSGKSILYLNRHQTEEWKGWMQVLFLMYHYFAASEIYNAIRLFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVVFCCIVLNNSYMLYYICPMHTLFTLMVYGALGIFNKYNEIGSVIAVKIIACFLVVILVWEIPGVFEWVWSPFTFMLGYTDPNAKSHVSRLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEEAEVKLRISIKAAVVLICSLVGYLWFEHIYKMDKLTYNKYHPYTSWIPITVYICLRNVTQSFRSYTLTLFAWLGKITLETYISQIHIWLRSGVPDGQPKLLLSLIPDYPMLNFMLTTSIYVAVSKSTCWIEIFMLIDSDLNILCRFPIGSLT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02668 521 Pfam 10 TM Acyl Transferase domain found in Cas1p 104 495 IPR012419 -
Cca11g02668 521 PANTHER N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE 7 495 - -
Cca11g02668 521 PANTHER PROTEIN REDUCED WALL ACETYLATION 2 7 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02668 Cca-Chr11 54087965 54094301 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02668 K03377 - gmx:100794337 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02668 11 54087965 54094301 Cca11g02668 11 54087965 54094301 ECH