Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02110 ATGGTGGCAACTGCTGCTACTTCTTCATTTTTCCCTGTTACCACACCCTCGCCAGACTCTGGTGGAGCAGGCAACAAACATGGTTCTTGTCATGTGAACCTTGGAGGACTAAAATCCAAACCTGCGTCTTCTGGTGGTTTGCAGGTTAAGGCAAAGGCGCAAGCCCCTTCGAAAATTAATGGTAGCACAGTTGCTACATCTGTAGAAAGCTTGAAGCATGAGGATGATTTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCTATCACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGACGGTCTCGTGTTTCGTGAAAACTTTCCTATTAGATCATATGAGATTGGTGCTGATCGAACAGCATCTATAGAAACAGTAATGAACCATTTGCAGGAAACCGCACTTAATCATGTTAAAACCGCTGGGATTCTTGGTGATGGCTTTGGTTCTACGCCAGAAATGTGCAAGAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTTGATCGCTATCCTACGTGGGGTGATGTTGTTCAAGTAGACACTTGGGTTTCTAAATCAGGGAAGAATGGTATGCGTCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCCTCCAGTGTTTGGGTCATGATGAATAAGCTGACAAGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGAGAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTGGAAGAGGATAATAGAAAACTGCCTAAACTTGATGACAAAACAGCAGATTATATTCGTACTGGTTTAACTCCAAGATGGAGTGATCTAGATGTCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAGAGTGCTCCACAGGCAATCTTGGAGAGTCATGAGCTTTGTGCCATGACTTTAGAGTATAGGAGGGAATGTGGTAGGGACAGTGTGCTGCATTCCCTTACTGCTGTATCTGGTGCCGACACTGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTTGAAGATGGTGCGGAAATTGTGAGGGCTAGAACTGAGTGGAGGCCCAAACCTGTGAACAACTTTGATATTGCCAATCAGGTTCCAGCAGAAAGTACCTAA 1257 0.4463 MVATAATSSFFPVTTPSPDSGGAGNKHGSCHVNLGGLKSKPASSGGLQVKAKAQAPSKINGSTVATSVESLKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFPIRSYEIGADRTASIETVMNHLQETALNHVKTAGILGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSKSGKNGMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVREEIGSYFVDSDPILEEDNRKLPKLDDKTADYIRTGLTPRWSDLDVNQHVNNVKYIGWILESAPQAILESHELCAMTLEYRRECGRDSVLHSLTAVSGADTGNLAHSGHVECKHLLRLEDGAEIVRARTEWRPKPVNNFDIANQVPAEST 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02110 418 CDD 4HBT 139 255 - -
Cca11g02110 418 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 299 406 IPR029069 -
Cca11g02110 418 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 133 285 IPR029069 -
Cca11g02110 418 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 1 404 - -
Cca11g02110 418 Pfam Acyl-ATP thioesterase 1 125 IPR021113 GO:0016790
Cca11g02110 418 Gene3D Hotdog Thioesterase 129 406 - -
Cca11g02110 418 MobiDBLite consensus disorder prediction 1 22 - -
Cca11g02110 418 Pfam Acyl-ACP thioesterase 136 400 IPR002864 GO:0006633|GO:0016790
Cca11g02110 418 MobiDBLite consensus disorder prediction 1 61 - -
Cca11g02110 418 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 1 404 IPR045023 GO:0006633|GO:0016297
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02110 Cca-Chr11 46724254 46729325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02110 1 402 Acyl Lipid Metabolism Gene Families AT1G08510 78.272 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02110 K10781 - gmx:100170693 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02110 11 46724254 46729325 Cca11g02110 11 46724254 46729325 ECH