Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02106 ATGGGTAATGGTTCCAGTGGAGGAGCTGTTGAAACGAATCGTTTAGCAAATGGTGAAGCATCTGAGAGCAGTTTTCACAAGCAAGCTGCTCAAGCTGATGCCAATGATGTAGTTGCTGACCCTGAAGCTCCTGCCAAGAGAGCCAGGTTGCAGAGGGATTTGACCTTTGAGGATGTGTATCAAAACGACGGTGTGTTTGACGACGAGGATGAAGATAGTGATTGGGAGCCGTTTCAGTTGCCTAAGTGTGTGGAGATCAAAAGGTGGTCCTGCAAAAATTGCACTATGGCTAACCTCGATGGTGATGACTGTTGTCAAATATGTGGGGAGCACAGGGACTCCAAAATCATCAGCCATGGTTTTTATGCATCTCCTCTTGCCCAAGATGAGGATCTGACTGAGGTCCAGGAAAGCATAAAAGGACTGAAAGATGTTGGCTCACAAGTGGCAAATAGTTCTACGGCAATTGGCTTTGATGAGAGAATGCTGTTACATGCAGAGGTTGAGAAGAAATCAGTTCCACACCCTGAGAGGCCAGATCGCCTTCGAGCCATTGCTGCTAGTCTTGCTAGAGCTGGCATATTTCCTGGAAAATGCTATTCAGTTCCTGCTAGAGAAATCACACCAGAAGAACTTATTACAGTTCACTCTTTGGACCATATTGAATCTGTGGAAGTTACAACTGAATCAATTTCTAGTTATTTCACTTCTGACACATATGCCAATCAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTGGCATCAGCAATTGTTTCTGGGCGTGCCAAAAATGGATTTGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGATTCTGCCTTCACAATAATGCTGCCGTGGCAGCATTGGCAGCTCAAGCTGCAGGGGCTAGGAAGGTGCTAATTTTGGATTGGGATGTTCATCATGGAAATGGGACACAGGAAATATTTGAACAAAACAAATCGGTCTTGTATATATCATTGCATAGACATGAGGGAGGAAAGTTTTATCCTGGTACTGGAGCTGCTGAAGAGGTTGGTAGTATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGAGGAGGAGTTGGTGACAATGATTACAATTTTGCATTTCAGCATGTTGTCCTTCCTATAGCTTCCAAGTTTAATCCAGATTTTACCATAGTATCTGCTGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGTGATGTTACTCCCTCTGGCTATGCACATATGACACATATGTTGAATGCTCTTTCTGGCGGAAAATTGCTTGTTATTCTTGAGGGGGGGTCCGTAGCTCATGCCTTTCATACTCGTTTATTCTATTAG 1380 0.4471 MGNGSSGGAVETNRLANGEASESSFHKQAAQADANDVVADPEAPAKRARLQRDLTFEDVYQNDGVFDDEDEDSDWEPFQLPKCVEIKRWSCKNCTMANLDGDDCCQICGEHRDSKIISHGFYASPLAQDEDLTEVQESIKGLKDVGSQVANSSTAIGFDERMLLHAEVEKKSVPHPERPDRLRAIAASLARAGIFPGKCYSVPAREITPEELITVHSLDHIESVEVTTESISSYFTSDTYANQHSALAARLAAGLCADLASAIVSGRAKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAEEVGSMGAEGYCVNIPWSRGGVGDNDYNFAFQHVVLPIASKFNPDFTIVSAGFDAARGDPLGCCDVTPSGYAHMTHMLNALSGGKLLVILEGGSVAHAFHTRLFY 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02106 459 PANTHER HISTONE DEACETYLASE 18 447 - -
Cca11g02106 459 MobiDBLite consensus disorder prediction 1 30 - -
Cca11g02106 459 MobiDBLite consensus disorder prediction 1 50 - -
Cca11g02106 459 Gene3D Histone deacetylase domain 151 456 IPR037138 -
Cca11g02106 459 Pfam Histone deacetylase domain 175 447 IPR023801 -
Cca11g02106 459 PRINTS Histone deacetylase superfamily signature 398 408 IPR000286 -
Cca11g02106 459 PRINTS Histone deacetylase superfamily signature 277 300 IPR000286 -
Cca11g02106 459 PRINTS Histone deacetylase superfamily signature 310 325 IPR000286 -
Cca11g02106 459 PANTHER HISTONE DEACETYLASE-RELATED 18 447 - -
Cca11g02106 459 ProSitePatterns Zinc finger RanBP2-type signature. 89 108 IPR001876 -
Cca11g02106 459 SUPERFAMILY Arginase/deacetylase 151 447 IPR023696 -
Cca11g02106 459 CDD HDAC_classII 175 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02106 Cca-Chr11 46644858 46657947 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02106 - - gmx:100802870 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02106 11 46644858 46657947 Cca11g02106 11 46644858 46657947 ECH