Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02103 ATGGCCCAAAACTTCGACGACCTCAATAATAAGCTCCCTGAGCTCAAATTAGATTCTAAGCAAGCGCAAGGGTTTCTGTCATTTTTCAAAACCCTACCTAATGATCCAAGGGCCATACGGTTTTTCGATCGCCGGGACTATTATACTGCCCATGGTGAAAATGCCACTTTCATTGCAAAGACCTACTACCACACCACTACTGCTATGCGACAACTGGGTAGTGGATCAAATGCTCTTTCCAGCGTAAGCGTCAGCCGGAACATGTTTGAAACAATTGCTCGTGATCTCCTTTTGGAGAGAACAGACCATACTCTTGAGCTCTATGAAGGTAGTGGTTCTAATTGGAGACTGGTTAAAAGTGGAACACCTGGTAATATTGGAAGTTTTGAAGATGTTCTGTTTGCCAGCAGTGAAATGCAAGATTCACCAGTTGTTGTTGCATTGTCACTTAACTTCCGTGAAAATGGGTGCACCATTGGGTTGGGATTTGTTGATCTAACTAAGAGAGTACTTGGAATGGCTGAATTCCTTGATGACAGTCACTTTACGAATGTGGAGTCAGCATTGGTTGCACTTGGCTGCAAAGAGTGCCTTCTGCCTGTAGAGTGTGGAAATAGAATGCTGTGTGATGTGCTGACTAAATGTGGTGTGATGTTAACGGAGAAAAAGAAATCTGAATTTAAAACCAGGGATCTGGTACAGGATCTCGGCAGGCTTGTTAAAGGTCCTATTGAACCAGTTCGAGATTTAGTGTCTGGATTTGAATTTGCACCGGGTGCTTTGGGGGCATTACTATCTTATGGAGAGTTACTGGCAGATGAAAGCAATTATGAAAATTATACTCTTCGTAAGTACAGTCTTGACAGCTACATGAGGTTAGATTCTGCAGCCATGAGAGCACTTAATGTCCTGGAAAGCAAAACTGATGCAAACAAGAATTTTAGTTTGTTTGGTCTCATGAATAGGACTTGTACTGCTGGAATGGGAAAACGATTATTGCACATCTGGCTAAAACAGCCATTAGTAGATGTAAAAGAAATTAATTCCAGGCTGGATGTAGTACAAGCTTTTGTAGAGGACACTGTTCTTCGACAAGATCTGAGGCAACATCTGAAAAGAATATCAGACATTGAACGATTGATGCACAGTCTTCAGAAGCGACGGGCTGCTCTGCAACATATTGTTAAACTTTATCAGTCAAGCATCAGACTACCTTTCATCAAAAGTGCTTTGGAAAAATATGACGGACAATTTTCCTCAATGATGAGGAGTAGGTATTTAGAACCTCTTGAGTTATGGACTGATGATGAGCACCTGAACAAATTCATTGGGCTTGTAGAAGCTTCTGTTGACCTTGATCAACTGGAGAACAGGGAATACATGATTTCTCCAAGCTATGACTCTACACTAGCTAATCTAAAGGAACAGCAAGAATCACTAGAGAGCCAAATACATAACTTGCATAAACAAACTGCTGATGATCTTGATCTGCCTATAGACAAGGCATTAAAGTTAGACAAGGGCACACAATTTGGACATGTTTTCAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAGAAGCTCAATACCCAGTTTATTGTACTGGAAACCCGTAAAGATGGAGTGAAATTTACCAACACCAAGCTCAAAAAACTAGGGGACCAATATCAGCAAGTTCTTGAGGAGTATAAAATTTGTCAAAAAAAGTTAGTTGATAGAGTGGTGCAAACTGCGACAACTTTCTCTGAGGTGTTTGAATCGTTAGCTGAAATAATTTCCGAGTTGGATGTATTACTGAGCTTCGCTGATTTGGCTTCTTCTTGTCCTACTCCCTACACAAGGCCTGACATCACTCCGTCGGACGAAGGAGATATTATTTTAGAAGGCTGCAGACACCCTTGCGTAGAGGCACAAGACTGGGTGAATTTTATACCGAATGATTGTAAGATTGTTAGAGGAAAAACTTGGTTTCAAATAATAACGGGGCCTAACATGGGTGGGAAATCAACATTCATCCGGCAGGTGGGTGTGAATATTTTGATGGCACAAGTTGGTTCCTTTGTTCCTTGTGACAAAGCCAGCATATCTGTTCGTGATTGCATTTTTGCCCGTGTTGGTGCTGGTGACTGCCAACTTCGTGGAGTTTCTACCTTCATGCAAGAAATGCTTGAAACTGCATCAATATTAAAAGGAGCTACTGACAAGTCCTTGATAATCATTGATGAGTTGGGACGTGGGACATCAACTTACGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCATATTGTTGAAGTAATCAAAGCACCTACTTTGTTTGCCACCCACTTTCATGAACTGACTGCATTAGCCCTTGAAAATGTAAGCAATGGGCCTCAGAAGCAAATTGTTGGTGTGGCAAACTATCATGTTAGTGCACATATTGACTCATCAACTCGAAAGCTAACTATGCTATACAAGGTTGAACCTGGAGCTTGTGATCAGAGTTTTGGTATTCATGTTGCTGAGTTTGCAAACTTCCCTGAAAGTGTTGTTACCCTAGCTAGAGAAAAGGCAGCAGAGTTGGAAGACTTTTCTCCTTCTGCAACATCCTTAACTGATACTACACAGGAGGTGGGTTCTAAACGTAAGAGAGTATTTGAACCCGATGACATGTCTCAAGGGGCTGCAAGGGCTCGCCAATTTCTTGAAGCATTTGTTGCTTTGCCATTAGAAACCATGGACAAAATGCAAGCTTTGCAAGAAGTAAGGAAGTTAACTGATACTCTGGAGAAGGATGCAGAAAACTGTCAATGGCTTAAAAAATTATTGTAG 2817 0.4139 MAQNFDDLNNKLPELKLDSKQAQGFLSFFKTLPNDPRAIRFFDRRDYYTAHGENATFIAKTYYHTTTAMRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNIGSFEDVLFASSEMQDSPVVVALSLNFRENGCTIGLGFVDLTKRVLGMAEFLDDSHFTNVESALVALGCKECLLPVECGNRMLCDVLTKCGVMLTEKKKSEFKTRDLVQDLGRLVKGPIEPVRDLVSGFEFAPGALGALLSYGELLADESNYENYTLRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHIWLKQPLVDVKEINSRLDVVQAFVEDTVLRQDLRQHLKRISDIERLMHSLQKRRAALQHIVKLYQSSIRLPFIKSALEKYDGQFSSMMRSRYLEPLELWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSTLANLKEQQESLESQIHNLHKQTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDQYQQVLEEYKICQKKLVDRVVQTATTFSEVFESLAEIISELDVLLSFADLASSCPTPYTRPDITPSDEGDIILEGCRHPCVEAQDWVNFIPNDCKIVRGKTWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENVSNGPQKQIVGVANYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPSATSLTDTTQEVGSKRKRVFEPDDMSQGAARARQFLEAFVALPLETMDKMQALQEVRKLTDTLEKDAENCQWLKKLL 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02103 938 Pfam MutS domain V 659 857 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca11g02103 938 Gene3D MutS, connector domain 123 288 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cca11g02103 938 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 915 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cca11g02103 938 Coils Coil 367 387 - -
Cca11g02103 938 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 24 915 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Cca11g02103 938 Gene3D - 291 519 - -
Cca11g02103 938 Gene3D - 520 613 - -
Cca11g02103 938 ProSitePatterns DNA mismatch repair proteins mutS family signature. 737 753 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca11g02103 938 Pfam MutS domain III 297 603 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cca11g02103 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 858 IPR027417 -
Cca11g02103 938 SMART DNAend 311 639 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cca11g02103 938 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cca11g02103 938 Gene3D DNA repair protein MutS, domain I 9 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cca11g02103 938 CDD ABC_MSH2_euk 627 857 - -
Cca11g02103 938 SMART mutATP5 656 854 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca11g02103 938 Coils Coil 550 570 - -
Cca11g02103 938 Coils Coil 470 490 - -
Cca11g02103 938 SUPERFAMILY DNA repair protein MutS, domain III 294 608 IPR036187 -
Cca11g02103 938 PIRSF MSH2 8 938 IPR011184 GO:0005524|GO:0006298|GO:0030983
Cca11g02103 938 Gene3D - 614 936 IPR027417 -
Cca11g02103 938 Pfam MutS domain II 144 280 IPR007860 GO:0005524|GO:0006298|GO:0030983
Cca11g02103 938 Pfam MutS family domain IV 466 563 IPR007861 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02103 Cca-Chr11 46586742 46594820 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02103 K08735 - gmx:100792272 1771.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02103 11 46586742 46594820 Cca11g02103 11 46586742 46594820 ECH