Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02100 GTCTTAAGCAAGGACAATCCTCCTCGGAAAACATTTGTGTATAAATTAGATGTTCCAGTTGCTGCAAGGTGGATATCTTTGGCTGTTGCCGAATTTGAAATTCTTCCTGATCACCAATTTAGTCTCGTATCACATATGTGTTCACTGCCTAATCTGTCAAAGATGCGAAATACAGTGGAGTTTTTCCACAGTGCCTTCAGCTGCTATAGGGATTATCTTTCAGTAGACTTCCCATTTGACTCATATACGCAAGTTTTCATAGAGCCAGAGATGGCAGTGTCATCATTGAGTTTAGGAGCCTCAATGAGTATATTTAGTTCTCAAGTTTTGTTTGATGAGAAGGTTATTGACCAGACTATTGATACAAGGGTAAAACTTGCATATGCTCTTGCAAGACAGTGGTTTGGAGTGTATATCACTCCTGAGGCACCAAATGATGAGTGGCTCTTGGATGGACTTGCTGGTTTCTTGACAGATTTTTTTATTAAGAAACATTTAGGAAATAATGAGGCACGGTACCGGAGATACAAGGCAAATTGTGCTGTTTGCAAAGTTGATAATGGTGGAGCGATAGCTTTGAGCTGTTCAGCTTCCTGTAAAGATTTATATGGAACTCAGTGCATTGGTTTGTATGGAAAAATAAGATCATGGAAGTCTGTAGCAGTTCTTCAGATGTTGGAAAAACAAATGGGTCCTGAATCTTTCCGTAGAATTTTGCAAACTATAGTTTCTCGGGCTCAAGATAAAACACGGTCCATGAAAACTCTTAGTACTAAGGAGTTTCGACATTTTGCTAATAAAGTAGGGAATCTTGAACGTCCATTTCTTAAAGATTTCTTTCCTCGGTGGGTCGGTTCTTGTGGATGTCCTGTTTTAAGGATGGGATTTTCCTATAACAAAAGGAAGAATATGGTTGAATTGGCTGTGTTGCGGGGATGTACTGCATTGCAGACTTCAAGCGCATCCATTCTTGATATTAACCCAGACACAGAAAATCGAGATGGAGATACTGGATATCCTGGTATGATGAGCATCAGGGTGTATGAACTGGATGGTATGTATGACCATCCAATTCTACCTATGGCTGGAGAAGCGTGGCAACTATTGGAAATTCAATGCCACTCAAAGCTTGCTGCTAGACGCTTTCAGAAGCCCAAGAAAGGTGTAAAACATGATGGCTCTGATGACAATGTTGATGTGCCTTCCATAGATATGCGTTCAAATACCGAGTCCCCTTTATTATGGATCAGAGCAGATCCTGATATGGAGTATCTTGCTGAGGTTCATTTTAACCAACCAGTTCAGATGTGGATCAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCACCCCAGCTATCATTTTCTATTGTAAATGCCCTAAACAATTTTCTCAGTGACTCCAAGGCTTTTTGGAGAGTACGGATTGAAGCAGCTTTTGCATTGGCAAATTCAGCATCAGAGGAAACTGATTTTTCTGGTCTACTCCATTTGGTGAAATTTTACAAGAGTCGAAGGTTTGATCCTGACATTGGACTTCCAAAGCCAAACGATTTTCATGATTTTGCTGAGTATTTTGTTCTTGAGGCTATTCCACATGCTGTTGCTATGGTTAGAGCTTCTGACAAGAAAAGCCCAAGAGAGGCTATCGAGTTTGTTTTACAGCTATTGAAGTACAATGACAACAACGGGAACCCTTATTCTGATGTCTTCTGGCTTGCTGCATTGGTCCAGTCAGTTGGTGAGCTTGAGTTTGGGCAACAGAGTATTCTCTTATTGTCATCACTCCTAAAACGCATTGACCGACTTCTACAGTTTGATAGTCTCATGCCAAGCTACAATGGAATCTTGACTATCAGTTGTATTCGGACATTGACCCAAATTGCTTTAAAGCTTTCGGGGTTCATTCCTCTTGATCGAGTTTATGAACTTGTAAAGCCTTTTCGGGACTTAAAGGCATTGTGGTTAGTCCGAATTGAAGCAAGTAGAGCACTCCTTGATCTTGAATTCCACTGCAAGGGCATGGATTCTGCGCTGCTTTTATTTATCAAATACATAGAAGAGGAGCATTCCTTAAGAGGGCAGTTAAAACTGGCCACCCATGTTATGAGGCTATGTCAGATGAGGGATGGATTGAATTCAAATGACGAAATTACAAGCCATACACTTGTCTCCATGCTTAATTTACTTGAAGGGCGTATGGCTTTTAATAATGTCTTTCTCCGGCATTACCTGTTCTGCATATTACAAATACTTGCAAGAAGACCCCCAACTCTTCATGGGATTCCCAGAGAAAATAGAACGTTGCATATGAGTCTCACAGAAGCTTGTAACTATCAGAAGAACATGTTTGTTCTTGATTCAGAAAGCAAACCTGTGGATCTGCCAAGTTCTACCCAAAACCTTACACAAAATCTGGGCCCAACAACAGATAGTTTGAGGGATGCACTTGATGAAGCTCCTAAAGACCAACCTTGTGAAGCTCCCACACTGGTGCATGTTGAAGCTCTAAAGGAAGTTTCCCTAGAGAAACCCAAAGAGGTACTTACTGAATTTCCCCAGGAAGTACCCATGGAAGCTCCAAATGAAGTTTCCAAGGAAGCCGATACTGTATCCAATAGCCATGAAAGAAAGAGGCCCATTAAAATCAAGGTCAAACAATCTTCTGCCACCAGTAGGGCTGATACTGATAATCAAGTGGTTGAACGATCTTTAGGCTGTCGTAATGAAATAGATCATGGAGCTAGCAGTTCAGTTTCTGTAGATGCACCCCAGAGGAATTTTGCCGAGACTCTTAGCATGAGTAATCACAATATTGACGAAGTTAATTCTTGGCATGATCGAGGTTCGCGCATGACTGCCAGCATTGGTAGTGCAAAGTTTTTAAGTGATGGTGATGAATTGGTCAAAGAACTCCAGTGCACTGCTGATTCAAGTATAGTTTATTCCCAGCCTCAGCCAGAAGATCCATCATCATCCAGTATTATCCAGGATAACAACATAGATGCTGATGCGCGGCGATATGCCAGTCTTCAAACTCTTTCAGTAGCAAGATTTGATCCTGACGGAGAATCATTAGGTAAAGAAATTTCTGGTCGTGGGaaggaaaagcacaaaagcaaagaaaagaaacggaaacgggaaagtaaTAAAGGACATCAAGATGATCCAGAATATTTGGAGCGTAAAAGATTAAAGAAAGAGAAAAAACGTCGGGAAAAAGAAATGGCAAAGCTGCAGAGTGATGAAGCGAAGAGATCCTCCATAGACTTGTCAAGTAAGAAGAAAGAGGAACCTGTAGTGGACGTTGCTAGACAAGTGAAATCTGTTGAACCCAGTGGATATAATTCTAAATCAGGAAAAAAGATCGATACCAAACCAGAGCCACCTGAAGGCACATCTGGTGCACCAAAAATTCGAATTAAAATTAAAAACCGAATGCTCAATAAGTCATAG 3486 0.4048 VLSKDNPPRKTFVYKLDVPVAARWISLAVAEFEILPDHQFSLVSHMCSLPNLSKMRNTVEFFHSAFSCYRDYLSVDFPFDSYTQVFIEPEMAVSSLSLGASMSIFSSQVLFDEKVIDQTIDTRVKLAYALARQWFGVYITPEAPNDEWLLDGLAGFLTDFFIKKHLGNNEARYRRYKANCAVCKVDNGGAIALSCSASCKDLYGTQCIGLYGKIRSWKSVAVLQMLEKQMGPESFRRILQTIVSRAQDKTRSMKTLSTKEFRHFANKVGNLERPFLKDFFPRWVGSCGCPVLRMGFSYNKRKNMVELAVLRGCTALQTSSASILDINPDTENRDGDTGYPGMMSIRVYELDGMYDHPILPMAGEAWQLLEIQCHSKLAARRFQKPKKGVKHDGSDDNVDVPSIDMRSNTESPLLWIRADPDMEYLAEVHFNQPVQMWINQLEKDKDVIAQAQAIAALEASPQLSFSIVNALNNFLSDSKAFWRVRIEAAFALANSASEETDFSGLLHLVKFYKSRRFDPDIGLPKPNDFHDFAEYFVLEAIPHAVAMVRASDKKSPREAIEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILLLSSLLKRIDRLLQFDSLMPSYNGILTISCIRTLTQIALKLSGFIPLDRVYELVKPFRDLKALWLVRIEASRALLDLEFHCKGMDSALLLFIKYIEEEHSLRGQLKLATHVMRLCQMRDGLNSNDEITSHTLVSMLNLLEGRMAFNNVFLRHYLFCILQILARRPPTLHGIPRENRTLHMSLTEACNYQKNMFVLDSESKPVDLPSSTQNLTQNLGPTTDSLRDALDEAPKDQPCEAPTLVHVEALKEVSLEKPKEVLTEFPQEVPMEAPNEVSKEADTVSNSHERKRPIKIKVKQSSATSRADTDNQVVERSLGCRNEIDHGASSSVSVDAPQRNFAETLSMSNHNIDEVNSWHDRGSRMTASIGSAKFLSDGDELVKELQCTADSSIVYSQPQPEDPSSSSIIQDNNIDADARRYASLQTLSVARFDPDGESLGKEISGRGKEKHKSKEKKRKRESNKGHQDDPEYLERKRLKKEKKRREKEMAKLQSDEAKRSSIDLSSKKKEEPVVDVARQVKSVEPSGYNSKSGKKIDTKPEPPEGTSGAPKIRIKIKNRMLNKS 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02100 1161 Coils Coil 1070 1097 - -
Cca11g02100 1161 MobiDBLite consensus disorder prediction 862 911 - -
Cca11g02100 1161 Gene3D Neutral Protease Domain 2 40 288 IPR027268 -
Cca11g02100 1161 MobiDBLite consensus disorder prediction 895 911 - -
Cca11g02100 1161 MobiDBLite consensus disorder prediction 1058 1074 - -
Cca11g02100 1161 MobiDBLite consensus disorder prediction 1032 1046 - -
Cca11g02100 1161 MobiDBLite consensus disorder prediction 1027 1161 - -
Cca11g02100 1161 MobiDBLite consensus disorder prediction 802 835 - -
Cca11g02100 1161 Pfam Peptidase family M1 domain 60 257 IPR014782 GO:0008237|GO:0008270
Cca11g02100 1161 SUPERFAMILY ARM repeat 224 765 IPR016024 -
Cca11g02100 1161 MobiDBLite consensus disorder prediction 1082 1114 - -
Cca11g02100 1161 MobiDBLite consensus disorder prediction 384 403 - -
Cca11g02100 1161 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 1093 IPR037813 GO:0005669
Cca11g02100 1161 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 51 293 - -
Cca11g02100 1161 MobiDBLite consensus disorder prediction 802 821 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02100 K03128 - gmx:100792795 2100.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02100 11 46530782 46551107 Cca11g02100 11 46530782 46551107 ECH