Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02089 ATGCTACAAAACCACAGAGTAGTGCGATTTTCTGCTCAACCATTCAATCCTCCAACTCGCACGATAGCACCATCACTTTCGCCATTCCAATTAATACCCAATTCCCCATCTTTTCCAATCCTCAAACAGCAATGCAGATTATCACGCAGAGAGCTCACAATCTTCAGCAACTCTTGCTTGCTACTTCTCTTGGATGGATCCAGAGCAAGAGCAGAAGATGATGTTGCTAACACAAGTAACACTGATCAACCAGAAGAAAATAGGACTGCAGCAGAAGAAGATGTTGCAAACACAAGTAACAGTGATCAACCAGAAGAGAATCTGACTTTAGCAGAAGATGTTGCCAACACAAGTAACAGTGATCAACCAGAAGAGAATCTGACTTTAGCAGAAGATGTTGCCAACACAAGTAACAGTGATCAACCAGAAGAGAATCTGACTTTCGCTGAAGATGTTGCTAATGAAAGTAACAGTGACAAACCAGAAGAGAATCTGACAACCACTCCCAGCTGCACTGAAAGAAAACCTACCAAACAAGTATTCCTAGACATATCTATTGATGGTGAACCTGTTGGTCGCATAACTATAGGGCTCTATGGAAATGAGGTTCCTGCGGGAGTTGATAGGTTTAGTAAGATTGTAAGTGGAGCTGCTGGCATTAGCTACAGAAGAAAAGAGTTTGTCAAAATCATGCCCAATTATGTCCAACATGGTGGCCTCAGATCCTATGGTGTGGATGTTGAACTTGCTACAAGGACAGGTAGCAATTTGGCTGCAGATACTCTTGTTCAGGAATGGGAGAGGGAGTATGAGAGGTGTCCTGGGACTAAAAACCTGGCTGGAAGTATAGGCATTATTGTGAGAAACCCATCGAAACCACCCCCGAAGTTGAAGCTGGTAGCAAAACAAGGGAAGCTGGAGATTGATCAAGAAGAAGTAGGAACTGATCCCAATGGGACAGAATTTGTCATTGCTACAAAGGATGCACCAGAATTGGACGCATCGACTCTGGTAATTGGAAGAGTAACACGAGGGATGGAGGTTGTGCAGAGGATCGGTCAGGTTAAAACAGTACAAGAAAACACAGGATCTCCATATTTTAGGGTAGCAAAGCTAATAGGAGACAAGCGAGCTGTTGTAGCTGAAAGGGGATTCAACCGCCCTTATTCGAAGGTCATTGTTACAAACTGTGGTTTAATGTAA 1203 0.4331 MLQNHRVVRFSAQPFNPPTRTIAPSLSPFQLIPNSPSFPILKQQCRLSRRELTIFSNSCLLLLLDGSRARAEDDVANTSNTDQPEENRTAAEEDVANTSNSDQPEENLTLAEDVANTSNSDQPEENLTLAEDVANTSNSDQPEENLTFAEDVANESNSDKPEENLTTTPSCTERKPTKQVFLDISIDGEPVGRITIGLYGNEVPAGVDRFSKIVSGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDVELATRTGSNLAADTLVQEWEREYERCPGTKNLAGSIGIIVRNPSKPPPKLKLVAKQGKLEIDQEEVGTDPNGTEFVIATKDAPELDASTLVIGRVTRGMEVVQRIGQVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVIVTNCGLM 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02089 400 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 1 400 IPR044185 -
Cca11g02089 400 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 181 399 IPR002130 GO:0000413|GO:0003755
Cca11g02089 400 MobiDBLite consensus disorder prediction 72 106 - -
Cca11g02089 400 Gene3D - 168 400 IPR029000 -
Cca11g02089 400 SUPERFAMILY Cyclophilin-like 177 399 IPR029000 -
Cca11g02089 400 MobiDBLite consensus disorder prediction 153 174 - -
Cca11g02089 400 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 182 360 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02089 Cca-Chr11 46448536 46449922 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02089 K03768 - gmx:100800469 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02089 11 46448536 46449922 Cca11g02089 11 46448536 46449922 ECH