Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02088 ATGGCGCAAGATTCTGAGAAGAAATTTCATTCCATCATGGACAAGTTCTCTCACCCTCGCAAACCCCCTTCCAGTTCATCTGGAATATCAGGTGGTAGGAAACGTCCTTACCAGTCAGGAGCAATGCAGTTGAATTGGAGAGGGGATGTTGCTGAAGGACACCAGTCCTCCGCCGTTGCCGAGGTGGAGAAGGAATCCTGCCGACCGTGGGATCGTGCTGATTTTATGAGGAGATTAGCCACATTCAAATCTATCTCATGGTTTGCTAAACCAAAGGTTATGGTGAGTGCTGTAAATTGTGCTAGAAGGGGTTGGATCAATGTGGATATTGACACCATAGCTTGTGAAGCATGTGGCGCACGTCTTCTTTTCTCTACACCAGCATCTTGGAATCAGCAACAGGTGGAGAAAGCAGCATTGGTCTTTAGCTTAAAGTTGAATAATGGACATAAAGTACATTGCCCATGGATTGATAATGCCTGCAATGAAACACTGGCACACTTTCCTCCTACAACTCCCTCGATATTAGTTGACAATTTCAGAGAACGCTGTTTTGCTCTCTTGCAACTATCAGCTATTCCTCGAATTTCATCTTCAACAATAGACTATATGAAAAGCCAAAGCTCACTTCTGGAAGACTTTCTTGGACAATCTTTGATGCTGGAGTATGGAAATGGATCTGCTGAGATTGGGAATGTTAGTAGTCAAGAGGAATTGAAATTGTATTTTCAGGCTCAAAAACTTGTAAGTTTATGTGGTTGGAAACTTCGTCCTCTACCTTATGTAGTTGATTGCAAGGATGTATCAAATGAATCTCTTAAAAATAGTTCTAATCTCATTGTCCATTCTGCTAACACCGATGAAAATTTGAGAACAGATGAAAATTCCAAGGATTCTACTGGGGGACAAATGGATCCCAGTTCTGCAGTATTAGATTGCACCCTATGTGGAGCCACTATTGGATTGTGGGCATTCCGTACAGTTTCTCTGCCTGTGGAATCAATAAGATTAGTGGGATATGCTGAAATGAATAGTGAAAAAGCTTTTTTGGCCCACAATTTATTGAATAAAAATGATCTTGAAAATAGGCAGGGTGTAAATAATACCATGTCTGATGTTGCAAATTCATCAAAGGATACTTCTTCAAGTCTAAATATGACAATTGCAGGGGGTCCTCCTCCAACAAAGCAAAATTTCAAAGCAATAATATCGATGCCTATTGTTGGTCAGAATTTAAGGGCTCGTCTTTCTTATGAATCTGAGTTCAGAGATCTTGTTTCTGTTGATAGATGTGGTATTCAAACAGATTTACAGGAGAGAACTGAAAATACCGCTAATGCTTCTACTGGACAACTTGTTCCCGTGTCATCTGAAATCAGGGAAATATCAAATTATGAAAATGGTTCTCAAGCAAGTATTCACGATTCAGATTTTATAGTGGGTACCAGTAATGCAGGTCAATCTTCTTCTCTCGAGGATAAGATGCCTGCATACACAGATGCTGATAAATTGAGTGGTTCAACTGCAGGATATCCTAGTAGTTCTCAGAAAGACTCTACAGAAGGTGAAGCACTTTCTGTTTCACACAAGACTTTGGATGGCGATGTTGGTAGTCTTGAAAATTCTGTGGTCAAAGACAGAGAAGAGAATCCCATTAGCAGTGAAGATGTACATTCTAGTTTAGGGAAGTTTAAGAATCCAACACTGTCTGATAAAGCAACGGAATTTGATCCAATCAGGCAGCATAGACACTTCTGCCCCTGGATTGCATCGATAGATGATGAGGAACCTGGGTGGAAACAAACATTATCTGCTCTGTATCAGAAAAATCATTTGCGACACTCACCAAATAAATCTCCATCATCTGTGCCCACTGTTAAGGTGGATGATCCTATCGTTTCAATTAGAGCGCTTTTAATGTCTCCACCAACAAAAAGATTGAAGCACAATCATATTACGGGCCATAATACAGAACTGCTTGGACCCAGAGATAAGATGGCTCCTAATTCAAGAACACCTCCCCACTCCTCCAGCTAG 2037 0.408 MAQDSEKKFHSIMDKFSHPRKPPSSSSGISGGRKRPYQSGAMQLNWRGDVAEGHQSSAVAEVEKESCRPWDRADFMRRLATFKSISWFAKPKVMVSAVNCARRGWINVDIDTIACEACGARLLFSTPASWNQQQVEKAALVFSLKLNNGHKVHCPWIDNACNETLAHFPPTTPSILVDNFRERCFALLQLSAIPRISSSTIDYMKSQSSLLEDFLGQSLMLEYGNGSAEIGNVSSQEELKLYFQAQKLVSLCGWKLRPLPYVVDCKDVSNESLKNSSNLIVHSANTDENLRTDENSKDSTGGQMDPSSAVLDCTLCGATIGLWAFRTVSLPVESIRLVGYAEMNSEKAFLAHNLLNKNDLENRQGVNNTMSDVANSSKDTSSSLNMTIAGGPPPTKQNFKAIISMPIVGQNLRARLSYESEFRDLVSVDRCGIQTDLQERTENTANASTGQLVPVSSEIREISNYENGSQASIHDSDFIVGTSNAGQSSSLEDKMPAYTDADKLSGSTAGYPSSSQKDSTEGEALSVSHKTLDGDVGSLENSVVKDREENPISSEDVHSSLGKFKNPTLSDKATEFDPIRQHRHFCPWIASIDDEEPGWKQTLSALYQKNHLRHSPNKSPSSVPTVKVDDPIVSIRALLMSPPTKRLKHNHITGHNTELLGPRDKMAPNSRTPPHSSS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02088 678 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 647 - -
Cca11g02088 678 Pfam C3HC zinc finger-like 69 191 IPR012935 GO:0008270
Cca11g02088 678 MobiDBLite consensus disorder prediction 1 37 - -
Cca11g02088 678 MobiDBLite consensus disorder prediction 506 526 - -
Cca11g02088 678 MobiDBLite consensus disorder prediction 540 554 - -
Cca11g02088 678 MobiDBLite consensus disorder prediction 1 17 - -
Cca11g02088 678 MobiDBLite consensus disorder prediction 500 566 - -
Cca11g02088 678 MobiDBLite consensus disorder prediction 284 305 - -
Cca11g02088 678 MobiDBLite consensus disorder prediction 646 678 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02088 - - gmx:100799942 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02088 11 46443397 46448208 Cca11g02088 11 46443397 46448208 ECH