Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02080 ATGGAGTCCGACGAAGACGATTTTGTTTTCTACGGAACGCCGATAGAGCGTGAAGACGATTTAACCAGTCGCAAAAAGAAGGCCATTGCTGAGGCCTCTGGTCAGCTCCGAACCCTCCCCGCTTGGAAGCAAGAGGTTCGAGATGAGGAAGGGCGGAGAAGATTCCATGGGGCATTTACAGGAGGTTATTCTGCTGGTTACTATAATACGGTGGGCTCAAAGGAAGGGTGGGCACCTCAGTCATTTAAATCATCCAGGAAGAACAGAGCTGAAGTCAAAGAGCAGAACATACTGAATTTTCTAGATGAAGATGAGAAAGCTGAAATGGAAGGTCGGTTGTTGGGGACAACTTCACAGTTTGACACATTTGGTTTCACAGCTGCTGAAATTGCTCGCAAACAAGCAGAGAAGGAACAGAAACAGAGGCCATCCATAATTCCTGGACCTGCTCCTGATGAAATAGTTGTTCCAGCCACCGAGTCTGTTGGGGTAAAACTGCTCTTGAAGATGGGATGGAGTCGTAGTCGCTCAATCAAGGATTCACATTCTGATGCTCTGTATGATGCCAGGAGACAGGCCCGTAGAGCTTTTTTAGCATTTTCTTCTGATGATCCAGCAGTAAAAATTACCGAGTCTGAGCTTATCAAGGGTGATAGTGAAAATTTTCCTGAGCAGCTTGTAGATGATGATCAGTTTTCTAAGAGCACACCGGTATTTGTACTCAACCCAAAAGAAGACCTGTATGGATTAGGTTTTGATCCTTATAAGCATGCTCCTGAGTTTAGAGAGAAAAAAAGATCACGCTTATCCAGCAAGAGGGGACCTGGGTATAGCAAGAACTTTTCCACTAGAGATAGTCCTTTTGGTTTGAAGTCAGGAAAGGCTGCCCCTGGTTTTGGCATTGGAGCCCTTGAGGAGCTTGATGCTGAGGATGAGGATGTCTATGCCACTGGTTTCGAAATTGAAGAGGCTTATGTTCAAGAAGTTGAAGAGCCTACAACGATGAGCTTAGAAAACCAGAGAAAGAAAGAGCAGAAGAACCAGGGTGATCTGCCTGGTTTTAGAGTTGCATCTAATTCTGACTATAAAATGGAAAGATTCGATTCTCCTCTGATTCCCAAGGATTTTGTGCCCCACCATAAATTTTCTGGACCTCTTGAAATTAATTGCAAGAGCTATGAAGTTACTCCGCCGGAGGTTTCTCCTCCCGAGGATGGCAATTTAAAACTACTAATTGAGGGGGTTGCAAATCTGGTTGCTAAATGTGGTAAATTATATGAGGATTTATCCAGAGAaaagaatcaaacaaatccattgtttagttttctttctggaggaactggacatgattattatgcaaggaaattgtgggagtcacaacaaaaatgcaatgatCAGACTAGTCGGCAATTGGATGGAAAAATGCCTCCCAGTGTGCAGAGGCTAACCGCTGAGAGCCGAGGTCAGATATTAGGGGAAACACCTCTAGAAAAAAGCGCCCAAGATCCATCCTCAACTATTGCTTCTACAGATATTCAACTCCAATTTAATCTTACTGATACATTCACCAAGTCTACATCATTTAATGAGTTAATGGATGAAGAAAAGCCTTTCAAAGATGATCTTGCAAAGCAAGAAAGATTTGAGCAGTTTCTTAAGGAGAAATATAAAGGTGGATTACGCACTGCAAGTTCTAGTTTAGCTGGTGATATGTCAGAAGCTGCTCGTGCTCAAGAGAGACTAAGTTTTGAGGCTGCAGCTGAGGCAATAGAAAAGGGACGACAGGGCAGGGGAAGCAAGTCTTCAATTCTGTCTTCCATGGATTTCATCCCAGGTGGTGTTATGCAGTTTACTTCTAGTGAAGTAGAGTCAAAGAAAGACCCGCTAGTTGAAGATATTTTGAGGAAAAAAATGTACCCTAAGAGGGAAGAGTTTCAATGGCGCCCTTCACCTCTTCTGTGCAAACGCTTTGATCTTATTGATCCTTATATGGGGAAGCCTCCGCCTGCTCCACGGATAAGGAGTAAGATGGATTCCTTGATTTTTACATCAGATTCAGTCAAAGTTACCAAAGTGGATGAAACTGTTTCTTCAAAGAAAGACATCTCTCCTTTTCAACAATCTGCTAATAAAGACATGACCAAAAGTATCACtgaaaatgaaactgaagtggatgtggaagtcgaaAATATTGAGAGGCCAGTTGACCTATACAAGGCTATTTTCTCCGATGATTCAGATGATGAAGGTGAAGACCCTAGTATTAAGAGAGTGGTGAATCAAGAAAAGAAAGCTGAAGTAGCCAATACAGCATTGAGCCGTTTGATTGCTGGTGATTTTCTAGAATCATTGGGCAAGGAACTAGGAATTGAGGTTCCTCCTGATGTACCTTATCCTATGCAAAAGTCTAGGAATGTTGCATCTCAGAAAGAAATTGTTAATGAAGATGCAAAGACCGACATTCTGAAGAGTGAAAATAATGGTGTGATGTCCTTAAATCATGATTTGCCATATGATCAGCACATTGCTCACGAGGGTGGACCATCAAAAGGTGACACCATTCATGGAAATATGCAAACCAAGGGAACCGGTATCATGGGCAATAAACCAGGTAAGTTTAACGGGGACAATATTGAAGATGAAGGGAAAATTAAATCCCCTTTAATCCGCAGCCAAGACTACGACAGCAGTTCAGAAGAGGAAAGGAGCAGAAAGGGAACTAATAGGGAAAAATCTGAAGAGTACAAGAAAGTTAAAACCTCTGGTACACGCCGCCGTGATTATAGCAGCAGTTCTTCATTAGAAGAGGAAAGGAGCAGAAAGCGTTCTAGACATCATCGACGGAAGAGGCATGATGCAGGAAGTGATTCATCTAGCGATGATGATAGAGATAGATACAGTTCAAGGTCAAAAGGGAGAAGGACAGGTTCTTCCCGAGAAAAAAGCAGGGGAAGTGAAAAACACTCAAAACACCACAAACACAGAAAGCATGAATCTCCAAGTAGATCCTCTCGATATATCAACGAGAAGGACAGTTCACATTCCAAAAGAGAGAAAAAACGGAGGGAATGA 3072 0.4092 MESDEDDFVFYGTPIEREDDLTSRKKKAIAEASGQLRTLPAWKQEVRDEEGRRRFHGAFTGGYSAGYYNTVGSKEGWAPQSFKSSRKNRAEVKEQNILNFLDEDEKAEMEGRLLGTTSQFDTFGFTAAEIARKQAEKEQKQRPSIIPGPAPDEIVVPATESVGVKLLLKMGWSRSRSIKDSHSDALYDARRQARRAFLAFSSDDPAVKITESELIKGDSENFPEQLVDDDQFSKSTPVFVLNPKEDLYGLGFDPYKHAPEFREKKRSRLSSKRGPGYSKNFSTRDSPFGLKSGKAAPGFGIGALEELDAEDEDVYATGFEIEEAYVQEVEEPTTMSLENQRKKEQKNQGDLPGFRVASNSDYKMERFDSPLIPKDFVPHHKFSGPLEINCKSYEVTPPEVSPPEDGNLKLLIEGVANLVAKCGKLYEDLSREKNQTNPLFSFLSGGTGHDYYARKLWESQQKCNDQTSRQLDGKMPPSVQRLTAESRGQILGETPLEKSAQDPSSTIASTDIQLQFNLTDTFTKSTSFNELMDEEKPFKDDLAKQERFEQFLKEKYKGGLRTASSSLAGDMSEAARAQERLSFEAAAEAIEKGRQGRGSKSSILSSMDFIPGGVMQFTSSEVESKKDPLVEDILRKKMYPKREEFQWRPSPLLCKRFDLIDPYMGKPPPAPRIRSKMDSLIFTSDSVKVTKVDETVSSKKDISPFQQSANKDMTKSITENETEVDVEVENIERPVDLYKAIFSDDSDDEGEDPSIKRVVNQEKKAEVANTALSRLIAGDFLESLGKELGIEVPPDVPYPMQKSRNVASQKEIVNEDAKTDILKSENNGVMSLNHDLPYDQHIAHEGGPSKGDTIHGNMQTKGTGIMGNKPGKFNGDNIEDEGKIKSPLIRSQDYDSSSEEERSRKGTNREKSEEYKKVKTSGTRRRDYSSSSSLEEERSRKRSRHHRRKRHDAGSDSSSDDDRDRYSSRSKGRRTGSSREKSRGSEKHSKHHKHRKHESPSRSSRYINEKDSSHSKREKKRRE 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02080 1023 Pfam Protein of unknown function (DUF1604) 39 119 IPR011666 GO:0006397
Cca11g02080 1023 MobiDBLite consensus disorder prediction 487 506 - -
Cca11g02080 1023 PANTHER BNACNNG56020D PROTEIN 888 1022 - -
Cca11g02080 1023 PANTHER BNACNNG56020D PROTEIN 1 819 - -
Cca11g02080 1023 SUPERFAMILY Surp module (SWAP domain) 390 461 IPR035967 GO:0003723|GO:0006396
Cca11g02080 1023 Gene3D Surp module 338 466 IPR035967 GO:0003723|GO:0006396
Cca11g02080 1023 MobiDBLite consensus disorder prediction 952 984 - -
Cca11g02080 1023 MobiDBLite consensus disorder prediction 335 349 - -
Cca11g02080 1023 MobiDBLite consensus disorder prediction 330 355 - -
Cca11g02080 1023 ProSiteProfiles SURP motif repeat profile. 411 455 IPR000061 GO:0003723|GO:0006396
Cca11g02080 1023 MobiDBLite consensus disorder prediction 1001 1016 - -
Cca11g02080 1023 MobiDBLite consensus disorder prediction 985 1000 - -
Cca11g02080 1023 Pfam Surp module 411 458 IPR000061 GO:0003723|GO:0006396
Cca11g02080 1023 MobiDBLite consensus disorder prediction 839 1023 - -
Cca11g02080 1023 MobiDBLite consensus disorder prediction 261 285 - -
Cca11g02080 1023 SMART surpneu2 409 461 IPR000061 GO:0003723|GO:0006396
Cca11g02080 1023 MobiDBLite consensus disorder prediction 874 940 - -
Cca11g02080 1023 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 819 - -
Cca11g02080 1023 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 888 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02080 Cca-Chr11 46364954 46376760 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02080 K13123 - gmx:100796934 1486.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02080 11 46364954 46376760 Cca11g02080 11 46364954 46376760 ECH