Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02069 ATGTTGTCACCAAACCTTGCAATGTCGACAATGGCTATGTGTGCAACTTTATTGCTATTCCTTTTGTGCTCGCCATCAGTAGCTATATTACTCACCAGGTTGCAACTACCATCACCAGTGATGGGTCCTGAGTCTGTAGCATTTGACCGAAACGGTGGAGGTCCATATGTTAGTGTTTCTGATGGAAGAATTCTTAAATACGTTGGTCCAGCCGAGGGATTCAAGGAATATGCTTACACTTCACCTAACAGGAACAAGACAATCTGCGATGGGCTTACTGATTTCTCAGAACTTCAAGCAACATGTGGGAGGCCCTTAGGGTTACGTTTCAACCATCAAACAGGTGAACTGTACGTAGCAGATGCTTATTTTGGGCTTATCAAGATCGGCCCTAATGGAGGGGCTCCAACCCAATATTCTCAAGGTATCCATCCACAAGAGAAAGAGAATAGCACCACTTTTCCATTTCTCGATGGCTTGGACATAGACGTCAACACCGGAATCGTTTATTACACCGAAGCTAGCTCCAACTATCGTTTCAAGGATATTGAGGCACTGCGAGGAAGCAGAGATATGTCTGGGAGCTTATACTCATTAGACCCAAGCACAAACGAAACAAGAGTGTTGATGAGGGGCCTTGCTTTGGCATCTGGTGTGGCAGTGAGTAGAGATGGGTCATTTGTTCTTGTAAGTGAATATTTGGCTAACAGAATTCAGAGATTCTGGCTTAAAGGGCCAAGGGCAAATTCATCTGACCTATTCTTGCAACTTACGGGTAGGCCTGATAACATTTGGAGGAACCCTAGAGGAGTTTGGAATGACTCACTCCGAAACCAAAACGGCGCCATGCCTACCATCAGCGTGGGGCGGGATCGCCTGTTTGCGGCTCTAGGAAAGACTTACACGCAAGAGGAATTCGAAGACTTGTGCTTCAGTTTCGGGATCGAGCTCGACGACGTCACAACGGAGAAGGCAATTGTGAGAAAAGAGAAGCATTTGGAGGAAGAAGAAGCTGATGACGACGAAGAAGTTATCTACAAAATCGAAATTCCCGCCAACAGATATGACCTCCTGTGCCTTGAAGGGCTTGCTCAAGCACTCCGAGTTTTCTGTGGGTTCCAGGAGATCCCCACTTACAGATTGTCCAACATTAGTAAGGATGCAATGCTTAAAATGCATGTGAAGCCAGAGACTTCTCTGATTCGTCCGTATGTTGTATGTGCTGTATTAAGAGGTGTAACTTTTGATAAAGTAAGATACAACAGCTTTATTGATCTCCAAGACAAGCTTCACCAAAACATATGTCGCCGAAGAACTCTTGTTGCCATTGGCACTCATGATCTGGATAAATTGCAGGGCCCTTTTACTTATGAGGCTTTACCACCTTCGAGTATAAACTTTACGCCATTAAAGCAGGAAAGGAACTTCAGGGCTGATGAGCTAATGGAGTTCTACAAATCAGATTTGAAATTGAAGAAATTCTTGCATATAATTGAGGACTCCCCTGTTTTCCCTGTTTTATATGACAGTAAGAGGACTGTTTTATCTTTACCCCCAATTATTAATGGTGCACATTCAGCAATCACTCTGGAGACAAAGAATGTATTCATAGAATGTACTGCTACTGATCTGACAAAGGCAAAGATTGTTTTAAATACAATGGTAACAGCCTTCTCAGAATATTGTGAAAACAAATTTGTCATTGAACCAGTTGAAGTGATTTCTTCTGATGGCAAGTCGAACATATACCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTAATGGATTGATCGGGGTGTCATTGGAGGCAGAAGAGGTCACTAAGTTCTTAAATCGGATGCAATTGCATGCCAAGCAGTCTACATCTGATAATAAGCAGTGCAAGTTTCTAGTATCCGTACCTCCTACTAGAAGTGATGTTCTTCACCCATGTGATGTTATGGAGGATGTGGCAATTGCTTATGGATTCAATGCTATTAAGGATAAGGCAGTGGTAGATAATAAGGGCTCCAAGAGGTTGGCTGCTTCCTTGACTCTTCTTCCTCTGAATGAGCTCAGTGATCTTATCAGAAAAGAGGTTGCATTGGTTGGGTTCACAGAGGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTTAACCGCAAAGATGACAGATCCAAAGCAGTTATCATTGGAAACCCTAGGTCTTCTGACTTTGAGGCGGTGCGGACTAGTCTTATGCCTGGCATTTTGAAAACTGTTGCCCACAACAAGGATCATCCGAAGCCCATAAAGATTTTTGAAGTGGGTGATATATCAATTTTGGATGACAAAAAAGATGTTGGTGCAAAAAATCTTCGCCAGCTTGCTGCTCTGTACTGTGGTGCTAATGCTGGATTTGAGATAATTCATGGCTTGGTCGACAGAGTAATGGAAAAGAACGGGGTTGCCTTTGTTTCACCTGGTGAAAAATCGGGGTATTATATTGAGCGGTCAGATGAGCCTGAGTTTCTTGCTGGTAGACAAGCTAGAATCATTTACAAAGGAAAGCATATTGGTACTTTTGGCATTGTTCATCCAGAGGTATTGAACAACTTCGACATTCCTGATCCTTGCTCCTTTGTTGAACTGGACATCGAAAGTTTCCTATGA 2658 0.4274 MLSPNLAMSTMAMCATLLLFLLCSPSVAILLTRLQLPSPVMGPESVAFDRNGGGPYVSVSDGRILKYVGPAEGFKEYAYTSPNRNKTICDGLTDFSELQATCGRPLGLRFNHQTGELYVADAYFGLIKIGPNGGAPTQYSQGIHPQEKENSTTFPFLDGLDIDVNTGIVYYTEASSNYRFKDIEALRGSRDMSGSLYSLDPSTNETRVLMRGLALASGVAVSRDGSFVLVSEYLANRIQRFWLKGPRANSSDLFLQLTGRPDNIWRNPRGVWNDSLRNQNGAMPTISVGRDRLFAALGKTYTQEEFEDLCFSFGIELDDVTTEKAIVRKEKHLEEEEADDDEEVIYKIEIPANRYDLLCLEGLAQALRVFCGFQEIPTYRLSNISKDAMLKMHVKPETSLIRPYVVCAVLRGVTFDKVRYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLQGPFTYEALPPSSINFTPLKQERNFRADELMEFYKSDLKLKKFLHIIEDSPVFPVLYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKIVLNTMVTAFSEYCENKFVIEPVEVISSDGKSNIYPDLSVYNMEVSLSYINGLIGVSLEAEEVTKFLNRMQLHAKQSTSDNKQCKFLVSVPPTRSDVLHPCDVMEDVAIAYGFNAIKDKAVVDNKGSKRLAASLTLLPLNELSDLIRKEVALVGFTEVLTFILCSKKENFAMLNRKDDRSKAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDISILDDKKDVGAKNLRQLAALYCGANAGFEIIHGLVDRVMEKNGVAFVSPGEKSGYYIERSDEPEFLAGRQARIIYKGKHIGTFGIVHPEVLNNFDIPDPCSFVELDIESFL 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02069 885 SUPERFAMILY Class II aaRS and biotin synthetases 658 884 IPR045864 -
Cca11g02069 885 Pfam Strictosidine synthase-like, N-terminal 32 66 - -
Cca11g02069 885 Pfam Strictosidine synthase 158 246 IPR018119 GO:0009058|GO:0016844
Cca11g02069 885 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 283 885 IPR045060 GO:0004826|GO:0006432
Cca11g02069 885 Pfam B3/4 domain 402 563 IPR005146 GO:0003723|GO:0004826
Cca11g02069 885 Gene3D - 382 587 IPR020825 -
Cca11g02069 885 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 283 885 - -
Cca11g02069 885 Pfam Phe-tRNA synthetase beta subunit B1 domain 283 371 IPR040659 -
Cca11g02069 885 Gene3D - 25 287 IPR011042 -
Cca11g02069 885 Gene3D Bira Bifunctional Protein; Domain 2 685 885 IPR045864 -
Cca11g02069 885 SUPERFAMILY PheT/TilS domain 396 563 - -
Cca11g02069 885 SMART B3_4_2 401 563 IPR005146 GO:0003723|GO:0004826
Cca11g02069 885 CDD PheRS_beta_core 686 884 IPR041616 -
Cca11g02069 885 Pfam tRNA synthetase B5 domain 591 661 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cca11g02069 885 SMART B5_2 588 661 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cca11g02069 885 SUPERFAMILY Putative DNA-binding domain 590 665 IPR009061 -
Cca11g02069 885 SUPERFAMILY Putative DNA-binding domain 286 377 IPR009061 -
Cca11g02069 885 SUPERFAMILY Calcium-dependent phosphotriesterase 32 270 - -
Cca11g02069 885 Gene3D - 288 371 - -
Cca11g02069 885 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 283 885 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Cca11g02069 885 ProSiteProfiles B5 domain profile. 586 666 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cca11g02069 885 Gene3D - 589 664 - -
Cca11g02069 885 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 686 881 IPR041616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02069 Cca-Chr11 46262053 46274719 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02069 K01890 - gmx:100812830 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02069 11 46262053 46274719 Cca11g02069 11 46262053 46274719 ECH