Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02052 ATGTGCAGGGCGGAGTGGGAAGGTTTTATGGGTTTGAAGAGGTGGGAGAGTAAGGTTCAGAAGGTGgggatggggttagggtcggcttcaggttcggcttcggcttcgTCTCGTTCCAAGATGAAGATGTGGATGATACGGGCTACCACATCGGTGTTACTGTGGACTTGCGTCGTTCAGTTAACGGCTCTCGGTGACATGTGGGGTCCCAGAGTTTTGAAGGGTTGGCCTTCTTGTTTCACTCACGAGTCCGCTGTTAGAGCATTGGACATGGAGTTACCCTCTCCGCGTCCTCCTCTTCTCCCTCCCAAGAGAGTTTATAAGAACAACGGATACCTCATGGTCTCCTGCAATGGAGGGCTCAACCAAATGAGAGCAGCAATTTGTGACATGGTGGCTATTGCCAGATATTTAAATGTCACGCTTATAGTTCCCGAATTGGATAAGACATCCTTTTGGGCTGATCCCAGTGACTTCCAAGACATATTTGATGTGGATCATTTTATCACGTCCTTGAGGGATGAAGTGCGGATATTGAAAGAGTTGCCTCCCAGGCTCAAGCTGAAAGTAGAACGTGGGTTTCTTTACACTATGCCGCCTGTCAGTTGGTCGGATATATCTTACTATAAGAACCAGATTCTGCCATTGATACAGAAGTACAAAGTTGTTCATTTGAATAGAACTGATGCTCGGTTGGCTAATAATGGTCAACCTATAGAGATTCAGAAGCTGCGTTGCCGAGTTAATTTTAGTGCTCTGAGATTTACTTCTCAGATAGAGGAGTTGGGGAGAAAGGTGATCAACCTTTTAAGGCAAAAAGGTCCATTTCTGGTGCTCCATCTGAGGTATGAGATGGACATGTTGGCATTTTCTGGCTGTACTCAAGGTTGCAACAGGGATGAGGTGGAAGAGTTAACAAGAATGAGATATGCTTATCCTTGGTGGAAGGAAAAAATAATTAATTCCGATTTAAAAAGAAAAGACGGTTTATGCCCTCTAACACCTGAGGAGACTGCCCTTACGCTTAAGGCTCTTGACATTGATCGGAACATTCAAATCTACATTGCAGCTGGGGAAATATATGGAGGGGAAAGGAGAATGGCAAGTCTTGGGAAGGAGTTCCCAAAATTGGTCAGGAAGGAAACACTGTTGGAGCCATCTGACCTTCGGTTCTTCCAAAATCACTCATCCCAGATGGCCGCATTGGATTATCTTGTCTCATTGGAGAGTGATATTTTTGTTCCCACTTATGATGGAAATATGGCCAAAGTGGTTGAGGGCCATCGCAGATATCTTGGGTTTAAGAGAACGATTTTATTGAACAGAAAGCTCCTAGTCGATTTGATAGATCAGTACAATAATGGAGTGCTGAACTGGGATGAGTTCTCTTCGGCTGTGAAGGAAGCTCATGCGTATCGCATGGGTAGCCAAACTAAGAGGCTAGTGATCCCTGACAGGCCCAAAGAAGAGGATTATTTCTATGCCAACCCACAGGAGTGTTTGGAACCATCAAATGATCTATCTGTTGGCGTTGAGTAG 1539 0.4353 MCRAEWEGFMGLKRWESKVQKVGMGLGSASGSASASSRSKMKMWMIRATTSVLLWTCVVQLTALGDMWGPRVLKGWPSCFTHESAVRALDMELPSPRPPLLPPKRVYKNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADPSDFQDIFDVDHFITSLRDEVRILKELPPRLKLKVERGFLYTMPPVSWSDISYYKNQILPLIQKYKVVHLNRTDARLANNGQPIEIQKLRCRVNFSALRFTSQIEELGRKVINLLRQKGPFLVLHLRYEMDMLAFSGCTQGCNRDEVEELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALTLKALDIDRNIQIYIAAGEIYGGERRMASLGKEFPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRYLGFKRTILLNRKLLVDLIDQYNNGVLNWDEFSSAVKEAHAYRMGSQTKRLVIPDRPKEEDYFYANPQECLEPSNDLSVGVE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02052 512 PIRSF UCP009360 10 498 IPR024709 -
Cca11g02052 512 Pfam GDP-fucose protein O-fucosyltransferase 112 432 IPR019378 -
Cca11g02052 512 CDD O-FucT_plant 112 437 IPR024709 -
Cca11g02052 512 PANTHER GDP-FUCOSE O-FUCOSYLTRANSFERASE-LIKE PROTEIN 16 506 - -
Cca11g02052 512 PANTHER OS02G0726500 PROTEIN-RELATED 16 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02052 Cca-Chr11 46092028 46095620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02052 108 501 Miscellaneous Gene Families AT2G37980 50.505 3.50e-132 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02052 K23280 - gmx:100793244 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02052 11 46092028 46095620 Cca11g02052 11 46092028 46095620 ECH