Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02025 ATGGCTTCCTCAATCAGTTTTGCTCCTTTTTTACTTCTATTGCTTGTTATTGGGTGCACTGCAAGGCCTTTGTATCGACTTCCTAGCCAAGGTCATGATGGAAGTCGGAAGCCCCTACAAACTTTTCGCCCGTATAACATTGCACATCGTGGTTCAAATGGAGAGCTTCCTGAAGAAACTCGTCCTGCATACTTGAGAGCTATTGAAGAAGGTGCAGACTTCATTGAAACTGATATCCTATCATCCAAAGATGGTGTTCTTATATGTTTCCATGATGTTACCCTTGATAATACTACTGACGTTGCAAATCATAAAGAGTTTGCTGATCGGAAAAGAACATATGAAGTCCAAGGGGAAAACATCACTGGCTTTTTTACTGTTGATTTCTCATTAAAGGAATTAAAGTCATTGAGGGTGAGACAGAGGTTTAGCTTCAGGGACCAACAATTTAATGGAAAGTTTCAAATTATCACTTTTGAAGAGTTCATTACCATAGCACTGGATGCACCCAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTATTTATCAATAAACGTGTGAAATGGTTGCATGGCAAAAGTTTTGAGGACAAGTTTGTGGAGACACTTCAGAAATATGGGTACAAAGGTTCCTATTTGTCAAAAGATTGGTTGAGACAACCTGCATTTATTCAGTCGTTTGCTCCAACTTCGCTCGTGTATATATCAAATAAAACAGACTTGCCCAAAGTTCTCTTAATTGATGATGTTACTGTTCCAACGCAAGACACTAATCAGTCATATTGGGAGATTACATCCAATAAATACCTAGACTACATAAAGCAATATGTTGTGGGAATCGGACCTTGGAAGGACACGTTGGTACCTGTGGTAAACAATTATATGATAAATCCTACTGATCTTGTTACTAGGGCTCATGCACATAACCTGCAGgtacatccatatacttaccgaaatgagaacaggtTTTTGCACTTCAACTTCTCTCAAGATCCGTATATGGAGTATGATTATTGGATCAATAAGATAGGTGTTGATGGTCTCTTTACAGACTTCACTGGTAGTCTTCATCATTTTCAGGAATGGACCACTAACCGTCAAGATGATGATAACAAAAGTGAATCCAAGTTATTGCATAAAATTGCTTTGTTGGTCTCCTCTTATAAAAAACCTTGA 1182 0.3706 MASSISFAPFLLLLLVIGCTARPLYRLPSQGHDGSRKPLQTFRPYNIAHRGSNGELPEETRPAYLRAIEEGADFIETDILSSKDGVLICFHDVTLDNTTDVANHKEFADRKRTYEVQGENITGFFTVDFSLKELKSLRVRQRFSFRDQQFNGKFQIITFEEFITIALDAPRVVGIYPEIKNPVFINKRVKWLHGKSFEDKFVETLQKYGYKGSYLSKDWLRQPAFIQSFAPTSLVYISNKTDLPKVLLIDDVTVPTQDTNQSYWEITSNKYLDYIKQYVVGIGPWKDTLVPVVNNYMINPTDLVTRAHAHNLQVHPYTYRNENRFLHFNFSQDPYMEYDYWINKIGVDGLFTDFTGSLHHFQEWTTNRQDDDNKSESKLLHKIALLVSSYKKP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02025 393 Gene3D Phosphatidylinositol (PI) phosphodiesterase 42 361 IPR017946 GO:0006629|GO:0008081
Cca11g02025 393 CDD GDPD_ScGlpQ1_like 44 355 - -
Cca11g02025 393 Pfam Glycerophosphoryl diester phosphodiesterase family 49 356 IPR030395 GO:0006629|GO:0008081
Cca11g02025 393 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 9 366 - -
Cca11g02025 393 ProSiteProfiles GP-PDE domain profile. 44 362 IPR030395 GO:0006629|GO:0008081
Cca11g02025 393 SUPERFAMILY PLC-like phosphodiesterases 44 359 IPR017946 GO:0006629|GO:0008081
Cca11g02025 393 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD6 9 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02025 Cca-Chr11 45690576 45695644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02025 16 363 Acyl Lipid Metabolism Gene Families AT5G08030 78.448 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02025 K01126 - gmx:100778145 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02025 11 45690576 45695644 Cca11g02025 11 45690576 45695644 ECH