Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02019 ATGGCGCAAACACAAACCCAAACCCAAACCCAGAGACCCTGTTCAAGCATCCTCGATTCTTTGGGGGAAGAAATCGTGAGAATCATCGCACCCGTTTCAATATGCATGTTCTTGGTCGTAATCTTGGTCTCAGTTCTGAACACCAAATCTCCGTTCGACCCGTCGATGGCCTCGATAGTCACCATCGCGTACACCGAAACAACCTCCGACTCCACCTGGGACAAGTTCCTAGGAGCCCTTTTGAACTCCTTGGCCTTCGTTGTGGtcgtcaccgtcgttaccttcgtcttggtcctcctcttctacttcCGATGCACCAGGTTCTTGAAGCTCTACATGGCTTTCTCCGCTTTCGTCGTGTTGGGCTTCCTTGGCGGTGAAGTCTCGCTCTTTTTGATTCAGCATTTCAGTACTCCCCTTGATTGCATTACGTTTTCCCTCGTTTTGTGTAATTTCGCTGTTGTTGGTGTTTTGGCCGTGTTCATGTCAAAAATGGCGATTTTTGTGACTCAAGGGTACTTGGTTGTTATTGGAATGCTGGTTGCGTATTGGTTTACTATGTTGCCTGAGTGGACCACTTGGGCCATGCTTGTTGCTATGGCGTTGTATGACCTTGCTGCGGTTTTGCTACCAATTGGACCGTTGAGGCTCTTGGTGGAGCTTGCAATTTCAAGGGATGAAGAAATTCCTGCATTGGTTTATGAGGCTAGGCCAGTGAACCATGGTAATTTGAGTCCTAGGGATGTTGTGCAGAGACGGTTGTGGAGAGATAGACAAAGGAGGCATGAGAATTCAATTCTCCAAACTGATTATTCCAACACGAATGCCAACTCAGTGTTGGCTCATAGCCCCAATGCTGAATCGCAATCCGATTCGGATGCAATCGCTGCCAATAACCGGGATGGCGCGAACTTGGTTAGGGAAAATGCTTCTTCAAATCCAAATTTGAATGATAACAGTAATACCTCTAGTGGCTCCTATAGTTACAGAAATTTGGTGAGTGTGGAGGAGGGACGGGCACGGGTTCAAGAGACGGATTCGGACCTTTCTGCGCCCTTGATTGATCGTGGAATGAATGTGCAGCTTGGTAGAGTGGAAGATGCTACTTCAAGTGAAAACTTGTTGCTAGAGGGAATTGGATTGGGTTCATCTGGTGCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTATAGTGTCTTGGTTGGTAGGGCGGCGATGTATGATTTTATGACGGTGTATGCGTGTTATCTTGCTATCATTGCGGGTCTTGGCATAACTTTGATGCTTTTGGCTTTGTATCAGAAAGCCTTGCCTGCTCTTCCCGTGTCAATAGCACTTGGCGTGTTGTTTTATTTCTTGACCAGGCTCTTACTTGAAGTATTTGTTGTACAATGTTCCTTAAATCTCCTGTTGTTCTGA 1419 0.4496 MAQTQTQTQTQRPCSSILDSLGEEIVRIIAPVSICMFLVVILVSVLNTKSPFDPSMASIVTIAYTETTSDSTWDKFLGALLNSLAFVVVVTVVTFVLVLLFYFRCTRFLKLYMAFSAFVVLGFLGGEVSLFLIQHFSTPLDCITFSLVLCNFAVVGVLAVFMSKMAIFVTQGYLVVIGMLVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPIGPLRLLVELAISRDEEIPALVYEARPVNHGNLSPRDVVQRRLWRDRQRRHENSILQTDYSNTNANSVLAHSPNAESQSDSDAIAANNRDGANLVRENASSNPNLNDNSNTSSGSYSYRNLVSVEEGRARVQETDSDLSAPLIDRGMNVQLGRVEDATSSENLLLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLMLLALYQKALPALPVSIALGVLFYFLTRLLLEVFVVQCSLNLLLF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02019 472 PANTHER PRESENILIN 15 472 - -
Cca11g02019 472 MobiDBLite consensus disorder prediction 265 293 - -
Cca11g02019 472 Gene3D Presenilin 380 464 IPR042524 -
Cca11g02019 472 PRINTS Presenilin family signature 29 39 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca11g02019 472 PRINTS Presenilin family signature 187 194 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca11g02019 472 PRINTS Presenilin family signature 204 221 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca11g02019 472 PANTHER PRESENILIN 15 472 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca11g02019 472 SMART psh_8 77 458 IPR006639 GO:0004190|GO:0016021
Cca11g02019 472 Pfam Presenilin 22 462 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca11g02019 472 MobiDBLite consensus disorder prediction 266 293 - -
Cca11g02019 472 MobiDBLite consensus disorder prediction 306 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02019 Cca-Chr11 45642726 45644144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02019 9 472 Miscellaneous Gene Families AT2G29900 57.849 2.30e-158 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02019 K04505 - gmx:100780823 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02019 11 45642726 45644144 Cca11g02019 11 45642726 45644144 ECH