Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02012 ATGGAGCGCAAGAGCGAGAAGAGTAGCGAAAGCACTGTCAGCGGTCAACGCCGCCGCGTTGGTTTACTATACGACGAGAGGATGTGCAAGCACCACATACCAGACGACGAGGACCATCCCGAGACTCCAAATCGCATCAGAGCTATCTGGAACAAACTCCAAAGCGCCGGCATTACCGAACGATGCGTGATCCTGGAAGCCAATGAAGCTGAAGACAAGCATATACTGTTAGTGCATTCTAAAAATCATGTGAATCTGATTAAGAACATCAGTTCAAAGAAGTTCAATTCGCAGAGGCGCAATATTGCGTCGAAATTGAATTCGATATACTTCAACGAAGGTTCATCAGAGTCTGCTTACCTTGCTGCTGGCTCTGCTATAGAGGTTGTTAAAAGAGTGGCAAGCAGGGAATTGGATTCTGCTGTTGCCATTGTTAGGCCTCCAGGTCATCATGCAGAACCAAATGAAGCTATGGGATTTTGTCTGTTCAACAATGTGGCAATTGCAGCAAGATATCTCTTAGATAAAAGACCAGAATTAGGTGTGAAGAAAATTTTAATTGTTGATTGGGATGTTCATCATGGAAATGGTACTCAAAAAATGTTCTGGAATGACTCTCGAGTTTTATTCTTCTCTGTTCACAGGCATGAGTTTGGGAGTTTTTATCCGGCTAATGATGATGGATTTTATACCATGGTTGGAGAAGGAGCGGGTGCAGGATATAATATAAATGTCCCCTGGGAGAATAGGGGATGTGGTGATGCTGATTACTTTGCAGTGTGGGACCATATCTTGCTTCCCGTTACCAAAGAATTTAACCCAGACATGATTATAGTTTCTGCTGGATTTGATGCAGCTGTTGGTGACCCTTTGGGAGGATGTCGTGTCTCACCATTTGGTTATTCTGTTTTGTTGGAAAAGTTGATGAATTTTGCTGAAGGGAGGATTGTATTGATTTTAGAAGGAGGATATAATCTTGATTCCATTGCAAAATCAATGCATTCTTGTTTGGAAGTTTTGCTAGAAGACAAGCCTGTTACTGGATCCTCAGAGGCCTATCCATTTGAGTCTACATGGCGGGTGATTCAAGCGGTTCGCCAGCAGTTAAATCCGTTTTGGCCTACACTTGCATGTGAATTACCGCCAAAGATAATCTCACAAATGGCGCCTCCTCCACATACTCTTATCTCGAGCTCAGACTCCGAGGCTGAGGATGATAATGGTGCACCAAGTTCAGAAAATCTTGGAGAACTTCTTGAGGATGTCATAAAACCATTTTCCAATCTGAAAGTTGATGCCGATGAAGAGACTGATGTTTCTAGTTCTTGGCGATCTGAATTATCAAATGTTTATATATGGTATGCCTCATATGGATCAAATATGTGGAAAGCAAGATTGCATTGCTACCTAGCAGGTGGACAGGTGGAAGGTATGCAGAGACACTGTTCTGGTTCAGCGAACAGAACAATGCCAAAGGAGATCCTGTGGAAGACTTTCCCTTGTCATATATTTTTTGGTCGTGATTCATCGCATTCATGGGGTCCGGGAGGAGTTGCATTTCTTAATCCTGAGAATAACTTTCAGCACAACACCTACATGTGCCTGTACAAAATTTCGCTAGAGCAGTTCAATGATATTTTATTTCAGGAAAATGGTTTAAGCCTTAACGCGGGCGCTCCCTTATTTGATATAACTACCCTGAATGCTATCTCTGACAAGGAGTTCAACTCCCAGCAGATTGTCAAGAGTGGTTGGTATGGTAATGTTGTCTACTTAGGAAAGGAGCAGGAGATTCCAATAATTACCATGACGTGTACGCTTCTTGATATTGAACGGTTCAAATCTGGGAAGCTACCAGTACGTGCCCCAAATAAAGCGTATGCCAACACCTTAATAAAAGGGTTGGTAGAGGGAGAACAGCTTTCGGAGGCAGAAGCCATCGCTTACATAGAAGGTGCTGCTAAATCGTTGTGA 1974 0.4301 MERKSEKSSESTVSGQRRRVGLLYDERMCKHHIPDDEDHPETPNRIRAIWNKLQSAGITERCVILEANEAEDKHILLVHSKNHVNLIKNISSKKFNSQRRNIASKLNSIYFNEGSSESAYLAAGSAIEVVKRVASRELDSAVAIVRPPGHHAEPNEAMGFCLFNNVAIAARYLLDKRPELGVKKILIVDWDVHHGNGTQKMFWNDSRVLFFSVHRHEFGSFYPANDDGFYTMVGEGAGAGYNINVPWENRGCGDADYFAVWDHILLPVTKEFNPDMIIVSAGFDAAVGDPLGGCRVSPFGYSVLLEKLMNFAEGRIVLILEGGYNLDSIAKSMHSCLEVLLEDKPVTGSSEAYPFESTWRVIQAVRQQLNPFWPTLACELPPKIISQMAPPPHTLISSSDSEAEDDNGAPSSENLGELLEDVIKPFSNLKVDADEETDVSSSWRSELSNVYIWYASYGSNMWKARLHCYLAGGQVEGMQRHCSGSANRTMPKEILWKTFPCHIFFGRDSSHSWGPGGVAFLNPENNFQHNTYMCLYKISLEQFNDILFQENGLSLNAGAPLFDITTLNAISDKEFNSQQIVKSGWYGNVVYLGKEQEIPIITMTCTLLDIERFKSGKLPVRAPNKAYANTLIKGLVEGEQLSEAEAIAYIEGAAKSL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02012 657 SUPERFAMILY Arginase/deacetylase 18 373 IPR023696 -
Cca11g02012 657 Pfam Histone deacetylase domain 39 339 IPR023801 -
Cca11g02012 657 Gene3D - 440 655 - -
Cca11g02012 657 PRINTS Histone deacetylase superfamily signature 147 170 IPR000286 -
Cca11g02012 657 PRINTS Histone deacetylase superfamily signature 274 284 IPR000286 -
Cca11g02012 657 PANTHER BNAA09G05590D PROTEIN 6 605 - -
Cca11g02012 657 Gene3D Histone deacetylase domain 12 388 IPR037138 -
Cca11g02012 657 MobiDBLite consensus disorder prediction 394 414 - -
Cca11g02012 657 PANTHER HISTONE DEACETYLASE 6 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02012 Cca-Chr11 45592095 45599006 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02012 K11406 - gmx:100788831 1206.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02012 11 45592095 45599006 Cca11g02012 11 45592095 45599006 ECH