Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01995 ATGTCGGGTTCAAAGAAATCTCCTTTGAAGGTTTCTAAACCTAGCTCTGTTGCATCTTGGACGAATCCATTTGATTCTGATGATGAGGCAGTGGATAACAGAAAGTATAGTTCATCTAAAAAGACTTCTTCAGGACGTGCACTTGTTACACTGGAAGTTAACACCAACCCCTTTGATGATGACATTGATGCCAACAAGAAATCTTCATCAACATCATATGCCTTTCAATCAGCGGATCGGAACAGGTATAAGAATGGTTTTCGTGATTCCGGTGGATTAGAGAATCAATCGGTGCAAGAATTGGAGAATTATGCTGTTTACAAGGCTGAAGAGACTACAAATTCGGTCAACAATTGTTTGAAGATAGCAGAGAACATAAGAGAGGATGCTACCAAGACACTAGTCACCCTTCATCAACAGGGTGAACAAATTACCAGGAGTCATCATGTTGCTGCTGACATTGATCACGATTTGAGTCGGGGAGAAAAGCTCTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCAAAGAAGACACGTGCAATAACAGGCCCGGTTATTGTTGGAGATGACCCAATCAGGAGAAAGGGAAATCACTTGGAGCAGAGAGAGAAGTTGGGGCTGACTTCAGCACCCAAAGGGCAGTCCAAGCTGCGGACCCCACCTCAGGAGCCAACAAATGCACTTGAAAAAGTTGAGGTTGAAAAAAGGAAGCAAGATGATGCACTATCAGATTTAAGTGATTTGTTAGGAGAGCTTAAAGAGATGGCTGTTGACATGGGATCCGAGATTGAGTGGCATAACAAAGCCCTGAATCATCTGTATGATGATGTGGATGAGTTGAATTTCCGAATGAAAGGTGCCAATCAACGTGGCAGTCGTTTACTCGGAAAATAA 903 0.4319 MSGSKKSPLKVSKPSSVASWTNPFDSDDEAVDNRKYSSSKKTSSGRALVTLEVNTNPFDDDIDANKKSSSTSYAFQSADRNRYKNGFRDSGGLENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHHVAADIDHDLSRGEKLLGSLGGLFSKTWKPKKTRAITGPVIVGDDPIRRKGNHLEQREKLGLTSAPKGQSKLRTPPQEPTNALEKVEVEKRKQDDALSDLSDLLGELKEMAVDMGSEIEWHNKALNHLYDDVDELNFRMKGANQRGSRLLGK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01995 300 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 300 - -
Cca11g01995 300 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 300 - -
Cca11g01995 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 235 297 IPR000727 -
Cca11g01995 300 MobiDBLite consensus disorder prediction 1 23 - -
Cca11g01995 300 SMART tSNARE_6 230 297 IPR000727 -
Cca11g01995 300 SMART tSNARE_6 101 168 IPR000727 -
Cca11g01995 300 MobiDBLite consensus disorder prediction 1 45 - -
Cca11g01995 300 Gene3D - 92 169 - -
Cca11g01995 300 Gene3D - 232 299 - -
Cca11g01995 300 CDD SNARE_SNAP25N_23N_29N_SEC9N 103 167 IPR044766 GO:0005484|GO:0031201
Cca11g01995 300 SUPERFAMILY SNARE fusion complex 234 298 - -
Cca11g01995 300 SUPERFAMILY SNARE fusion complex 96 166 - -
Cca11g01995 300 CDD SNARE_Qc 238 296 - -
Cca11g01995 300 MobiDBLite consensus disorder prediction 209 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01995 Cca-Chr11 45377702 45380867 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01995 K18211 - gmx:100809874 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01995 11 45377702 45380867 Cca11g01995 11 45377702 45380867 ECH