Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01987 ATGGGTAGTGAGATAGATACCAAATCAATTGAACCGGTCCGAAATGCCGTGTCTTTGTTTGGAGATAAAGGTGATCAGAAGAAATATCAACCTACCAGGAGTAAGAGTGGTTGTGAAAAAGAACTAGAGGAGTTGACAAAGGAATTGTCCAACTGCAAGGTACAATTAGAAGCAAAGCAAGCTGCACACATGCAAGCACTTCTTAAGATGGAGCACAGCCAAAAGATGATTCATGAATTGACTACCCTGCTGAAGAATTCTGATTTTGAGAGAAACAAGAACACGAATGAATGTTCAGAGTGCAGAGCTTGCAAAGATGAACTTGAATCCAAGATGAAAGAGATGGCTGATCAGAATTTGGAGACTGCAAAGGTCCGGAACCAGCTTACACATGTTTTGTGTGAATTGAAGGCGACACAAAGGGAGCTTCTAAACAAAGAAACAGAACTTGTTGCTGCTAGAGATTCTGAACTGAAAGCTTTGACAAATGCAAAACAATTGGAATCTGCCTTGGAGGTTGAAAAGGAACAGAAAGAAGAACTCCTGCAGCAAGTGAAGGAGCTAAATGAAGTTATTCACAATTCAAAACTAGCTGCCATTGAAGCTGAGAAAGAGAAGTTAGCTATATTGTCTGAGAAGGATGAGAAAATTGATTTAGCTACAAAAGCTACTGCTCAAGTACAACAACAGCTAGAAGATATGAGAAAGCATGTAGAAATGCTACAGGAATTACAAAATCAGCTAATGGATAAGTCTACTACACTGGTTGATTCTCTTCCCTTGGAACCTATGCAAGCTTATGAAACACTCACTTTATCTGAGGATTCTGCTCCCAAAAACATAAACAACTCAGACCAATTAATCATTGACATGGAGCTAAAGGAAAGAAAGATCATGGATCAATCTGTGTACATTGAGACACTGGAAGCGGAATGGAGTCGGTTAAAACAAGAGCTCACTGTTGCAAAGGAAGAAATAAATTCCTTGAACATTACTAATGAATCACTGAGAAGTGAGTTACATGAGGCTAGAGTTAAACAAAACATGAAAAAGGAGACTGACAATGAAGCACAGGTGGAAATTGCATTGCTGAAATCTCAGCTTCAGGAACTTAGGTTGACTAACAAGAATGATCACTCAAAGTCAGAAGCTGAGGAGAGAAATAGTGAAAATAATGATGACCATGTCACATGCAAATACTACTTTGAGAAGACAAGTGGAGCTCAAGGATCAGTAGGGGAAGTTGGAAGATTATCAGAGTTAGCATTGATGAAAAAGGAGGTGGAAAATGCATCAGTGAAAATTGCTGAGCTGAGGGCACGTGCAGAACAGGCTCTAAGTAGGGCTGAGTTTGCTGAGAATGCTAAAGCAGCATTAGAGGACAAAATAAGGAGACATAGGGAACATAGGCAGAGAAGGAGGGCTGCCCTTACTGCACTTAGGGAGGAATCTACCCCTAAACCATTTAGTCCTTCCTCATCTTATGGAACACCTGGAACCTACCAGCCCTTAGGTAAGGTTCTCAATATGAAATTGTGA 1539 0.4029 MGSEIDTKSIEPVRNAVSLFGDKGDQKKYQPTRSKSGCEKELEELTKELSNCKVQLEAKQAAHMQALLKMEHSQKMIHELTTLLKNSDFERNKNTNECSECRACKDELESKMKEMADQNLETAKVRNQLTHVLCELKATQRELLNKETELVAARDSELKALTNAKQLESALEVEKEQKEELLQQVKELNEVIHNSKLAAIEAEKEKLAILSEKDEKIDLATKATAQVQQQLEDMRKHVEMLQELQNQLMDKSTTLVDSLPLEPMQAYETLTLSEDSAPKNINNSDQLIIDMELKERKIMDQSVYIETLEAEWSRLKQELTVAKEEINSLNITNESLRSELHEARVKQNMKKETDNEAQVEIALLKSQLQELRLTNKNDHSKSEAEERNSENNDDHVTCKYYFEKTSGAQGSVGEVGRLSELALMKKEVENASVKIAELRARAEQALSRAEFAENAKAALEDKIRRHREHRQRRRAALTALREESTPKPFSPSSSYGTPGTYQPLGKVLNMKL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01987 512 MobiDBLite consensus disorder prediction 1 35 - -
Cca11g01987 512 Coils Coil 161 205 - -
Cca11g01987 512 Coils Coil 305 346 - -
Cca11g01987 512 Coils Coil 421 472 - -
Cca11g01987 512 Pfam Weak chloroplast movement under blue light 5 376 IPR008545 -
Cca11g01987 512 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 377 511 - -
Cca11g01987 512 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 3 386 - -
Cca11g01987 512 Coils Coil 354 374 - -
Cca11g01987 512 Coils Coil 35 62 - -
Cca11g01987 512 MobiDBLite consensus disorder prediction 478 502 - -
Cca11g01987 512 MobiDBLite consensus disorder prediction 373 392 - -
Cca11g01987 512 PANTHER EXPRESSED PROTEIN 377 511 - -
Cca11g01987 512 PANTHER EXPRESSED PROTEIN 3 386 - -
Cca11g01987 512 Coils Coil 136 156 - -
Cca11g01987 512 MobiDBLite consensus disorder prediction 485 500 - -
Cca11g01987 512 Coils Coil 224 251 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01987 - - gmx:102665346 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01987 11 45290050 45291794 Cca11g01987 11 45290050 45291794 ECH