Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01984 ATGAGTTCCTCTCCACAGCGTTCTCGCGGCGATGGCGACAACAGACCTAGATTCTTCGACTCTAAGACCAAGGCCATCTGTTGGGCCAAGGCCGATACTGTCTCCGGCCGCCACCCTGAGCGGTGGCGCAAAGACGCTGCCGGCAACATTGTCTGCAAACGTTTCTTCAACTGCATCGGTTGCCTCTGCTACGAGTACGATCACATCATTCCCTTTTCCAAAGGTGGTGAGTCCACAGCGGATAATTGTCAAATACTTCAATCTAGGGTTAACAGATTCAAATCGGACAAATATCACGTTGATTCCGATCAATTGAAAGACTACTCTTGTGAGGTTAATTTTACTGATAAGGAGCTTGATATAATTGAGATGGCTGTTTATGGAGATGTGTTGCGGCCAGGAAACCAATGTCGTTGCAGAACTGTGGCTGAAAAACTTGGCAAATTCAAATCAAAAGATGACACAGATGCATGTAAGTTGCCATAG 486 0.465 MSSSPQRSRGDGDNRPRFFDSKTKAICWAKADTVSGRHPERWRKDAAGNIVCKRFFNCIGCLCYEYDHIIPFSKGGESTADNCQILQSRVNRFKSDKYHVDSDQLKDYSCEVNFTDKELDIIEMAVYGDVLRPGNQCRCRTVAEKLGKFKSKDDTDACKLP 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01984 161 PANTHER F6A14.21 PROTEIN 12 160 - -
Cca11g01984 161 CDD HNHc 53 92 IPR003615 -
Cca11g01984 161 Gene3D - 22 117 - -
Cca11g01984 161 PANTHER HNH ENDONUCLEASE 12 160 - -
Cca11g01984 161 SMART HNH_5 46 92 IPR003615 -
Cca11g01984 161 Pfam HNH endonuclease 52 87 IPR002711 GO:0003676|GO:0004519
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01984 Cca-Chr11 45266859 45269048 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01984 - - gmx:100775923 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01984 11 45266859 45269048 Cca11g01984 11 45266859 45269048 ECH