Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01978 ATGGGGCAAGAGAACAACCACAAGCGCACCACCAGCGCCGCCTTGCCCACCGCCCGAGGCCGCGGCGCCGCACTCCCCCGCggccgccagatccagaagaccttcaacaacatcaagatcaccatcctctgcggcttcgtcACcatcctcgttacctttgtctctgacgacatcctcgtcctccgcggcaccatcggcgtcaacctcggctcctccgacgccgacgccgtcaaccagaatctcgtggaggagaccaaccgcatcctggccgagatccgctccgacgccgaccccaacgaccccgacgagcaagcccccttgaaccctaacgtgacctacagcctgggccccaagatccgcaattgggacgaagaacgcaaggcttggctcctccaaaaccccgaataccctaatttcgtgagaggtaaaccccgcatcttgctcctcactggttcccctcccaagccctgtgataaccctattggggaccattacctctTGAAGTCCATTAAGAACAAGATTGATTACTGTAGATTGCATGGGATTGAAATTGTTTACAATTTGGCCCATTTGGATGTTGAGCTTGCTGGCTATTGGGCCAAATTGCCCATGATTCGGAGGTTGATGTTGTCCCACCCTGAGGTCGAGTGGATTTGGTGGATGGATAGTGATGCCTTTTTCACTGATATGGTCTTTCAGCTTCCTATGCCTAAGTATGACAAATACAATTTGGTTCTCCATGGCTACCCTGATCTCATGTTTGAGCAGAAGTCTTGGATTGCTATCAATACCGGCAGTTTTTTGTTTAGGAATTGTCAGTGGTCTTTGGATTTGCTTGATGACTGGGCTCCCATGGGCCCCAAGGGGCCCATTCGTGAGGAGGCCGGCAAGATCTTGACGGCCAATCTCAAGGGCCGGCCGGCATTCGAGGCCGACGATCAGTCTGCTTTGATATACTTGTTGCTGTCCAAGAAGGACAAGTGGATGGATAAGGTGTTCCTTGAGAATTCTTACTATTTGCATGGATATTGGGCTGGATTGGTGGATCGGTATGAGGAGATGATTGAGAAGTATCACCCTGGTTTGGGGGATGAGAGGTGGCCCTTTGTGACGCATTTTGTCGGCTGTAAGCCGTGTGGGAGCTATGGAGATTATCCTGTGGAGAGGTGCCTCAGTAGCATGGAGAGGGCTTTCAATTTTGCTGATAATCAGGTGCTCAAACTCTATGGGTTCAGGCATCGCGGTTTGCTCAGTCCCAAGATCAAGAGAATCAGGAATGAGACGGTTAATCCTTTGGAGTTTGTAGACCAGTTTGATATTCGGAGACATTCT 1332 0.3386 MGQENNHKRTTSAALPTARGRGAALPRGRQIQKTFNNIKITILCGFVTILVTFVSDDILVLRGTIGVNLGSSDADAVNQNLVEETNRILAEIRSDADPNDPDEQAPLNPNVTYSLGPKIRNWDEERKAWLLQNPEYPNFVRGKPRILLLTGSPPKPCDNPIGDHYLLKSIKNKIDYCRLHGIEIVYNLAHLDVELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDAFFTDMVFQLPMPKYDKYNLVLHGYPDLMFEQKSWIAINTGSFLFRNCQWSLDLLDDWAPMGPKGPIREEAGKILTANLKGRPAFEADDQSALIYLLLSKKDKWMDKVFLENSYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSMERAFNFADNQVLKLYGFRHRGLLSPKIKRIRNETVNPLEFVDQFDIRRHS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01978 444 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 142 287 IPR029044 -
Cca11g01978 444 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 3-RELATED 17 443 - -
Cca11g01978 444 MobiDBLite consensus disorder prediction 1 25 - -
Cca11g01978 444 Pfam galactosyl transferase GMA12/MNN10 family 143 381 IPR008630 GO:0016021|GO:0016757
Cca11g01978 444 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 17 443 IPR008630 GO:0016021|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01978 Cca-Chr11 45185746 45187471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01978 1 444 Glycosyltransferase AT5G07720 75.764 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01978 K08238 - gmx:100793238 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01978 11 45185746 45187471 Cca11g01978 11 45185746 45187471 ECH