Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01976 ATGGGTCCTCCTCCCGCTGAAGATCGTTCTGAGATAGTCTTCTTCGATGTTGAAACCAGCGTTCCGACCCGACCCGGCCAGGGTTTCGCAATTCTCGAATTCGGAGCCATTTTGGTTTGCCCCAGGAGGCTCACGGAGCTCCGGAATTATTCCACTCTGGTCCGACCCGCCGACCTTGCCGTCATCTCGCCGTTGTCGGAGCGCTGCAACGGTATCACCGCCGACGCCGTTTCCACCGCTCCTACTTTCGCCGACATTGCTCAACTCGTTTACGATCTTCTTCACGGGAGGATTTGGGCGGGTCATAATATCATAAGGTTCGACTGTGTTCGGATTAGAGACGCGTTTGCTGAGATTAATCAGCCACCGCCTCAACCTAAGGGGACCATTGACTCTCTGGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCCGGTGACATGAAGATGGCTACTCTTGCTACTTATTTTGGGCTTGGACGCCAGACACACAGGAGCTTAGATGATGTTCGGATGAATCTTGAAGTCCTCAAATACTGTGCAACAGTTCTTTTCTTGGAGTCAAGTCTCCCAGATGTATTCACTGCAAATAGCTGGGTTTCACCAAATGCTACTACAAGAAGCCGCAGTAATGGGAAATCTCCATCACAGGGGGGCTTATTAAATATTAATAAGGATTCTGTATTGTCATCTCCTGCAACTGGATCCAAAGACAAAAATCACCCAATACTTTCTTTTGCAATGAGTAGCCCAAAAGGGGAAGTCTCAAATATTTCAGATCCTAATATAGTTCAACAGGATCCTTTTAACTTCCATGCTCTTGAGGATGAATTAAAAAGAGAATCCTCTAAGTCAGATGTTGCCATGGAGGAGAAAACCATGCAAGACTCACCTGATTTGGCTTCCTCCTCTTCTGCATCCCAGCCTTGCAGCAGCTCTATTGCCATTTTAGAACCTGATGGAATATGTATCCCTTCTATTGATGCATCTCTTGTTCCATTTTTCCGTGGCAGTCATAGGATAGAATTACTGCATGAAGGTTTCCCATTTGAGCTTCATTGTACTGATTTGAAAGTGCGGTTTGGAATAAACACAAAGTTTTTCGACAATGCTGGCCGGCCACGATTGAGTTTTGTGGTTGATTCATCACCAAGTCTATGTAATGTTCTTGATGCATGTGATCGTGTAGCACAGAAGTTAACATTGGATTCTGGAAGCAGCTCTGATTGGAGGCCTGCTGTTATTAGGAAAGAAGGCTTCTTCAACTATCCTACTGTCAGATTGCACATACCTACAGCAGTAGTGGCAGACGTCGCTATTTATGCCACAGAAATATATCAAAGAGAATCGTCTGGAACAGTGCAAAGACTTCTCTTCAGTAAGTTTGATGCTGCAGAACTAGTTTCTTTGTTCATGCCCGGGACACTTGTTGATGCCTTCTTCTCCTTAGATCCGTATGACTATCAGCAGAATGCAGGGATTAAATTAGTTGCCAAAAAATTGATCATTCATTGCAAATAG 1518 0.4493 MGPPPAEDRSEIVFFDVETSVPTRPGQGFAILEFGAILVCPRRLTELRNYSTLVRPADLAVISPLSERCNGITADAVSTAPTFADIAQLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEINQPPPQPKGTIDSLVLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLESSLPDVFTANSWVSPNATTRSRSNGKSPSQGGLLNINKDSVLSSPATGSKDKNHPILSFAMSSPKGEVSNISDPNIVQQDPFNFHALEDELKRESSKSDVAMEEKTMQDSPDLASSSSASQPCSSSIAILEPDGICIPSIDASLVPFFRGSHRIELLHEGFPFELHCTDLKVRFGINTKFFDNAGRPRLSFVVDSSPSLCNVLDACDRVAQKLTLDSGSSSDWRPAVIRKEGFFNYPTVRLHIPTAVVADVAIYATEIYQRESSGTVQRLLFSKFDAAELVSLFMPGTLVDAFFSLDPYDYQQNAGIKLVAKKLIIHCK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01976 505 CDD DEDDh 13 177 - -
Cca11g01976 505 SUPERFAMILY Ribonuclease H-like 11 181 IPR012337 -
Cca11g01976 505 MobiDBLite consensus disorder prediction 279 305 - -
Cca11g01976 505 PANTHER PROTEIN NEN3 7 504 - -
Cca11g01976 505 MobiDBLite consensus disorder prediction 201 245 - -
Cca11g01976 505 Gene3D - 7 183 IPR036397 GO:0003676
Cca11g01976 505 Pfam Exonuclease 13 176 IPR013520 -
Cca11g01976 505 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 7 504 - -
Cca11g01976 505 SMART exoiiiendus 11 185 IPR013520 -
Cca11g01976 505 MobiDBLite consensus disorder prediction 201 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01976 Cca-Chr11 45171189 45174681 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01976 - - ccaj:109808157 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01976 11 45171189 45174681 Cca11g01976 11 45171189 45174681 ECH