Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01973 ATGGCTGCAACTTCTTCCTTGTGCTCATCCACCCTCCAATCCCAAATTAATGGATTCTACCTTCGCAAAACCTCCCTTCTCCACCCTCCTTCTCTTACTTTCTCCAGGAGGAAATTTTCAACCACGGTGAAGGCTTCATCTCGTGTTGACAAGTTTTCAAAAAGCGATATCATTGTTTCTCCATCCATTCTTTCTGCTAACTTTTCAAAATTGGGAGAGCAGGTGAAAGCTGTCGAGTTGGCTGGTTGTGATTGGATTCATGTTGATGTAATGGATGGTCGCTTTGTTCCAAATATTACAATTGGACCTCTTGTGGTTGATGCATTGCGTCCTGTGACTGATCTTCCTTTGGATGTACACCTGATGATTGTAGAGCCTGAACAAAGGGTGCCAGATTTTATCAAGGCAGGAGCTGATATTGTCAGTGTTCACTGTGAACAATCTTCCACCATCCATTTGCATCGTACAGTTAATCAAGTGAAAAGTCTGGGAGCTAAGGCTGGTGTTGTCTTAAACCCTGCTACCCCCTTAACTGCAATAGAATATATCCTTGATGTGGTTGATTTGGTCTTAATTATGTCCGTAAACCCTGGATTTGGTGGCCAGAGTTTTATTGAGAGTCAAGTAAAGAAAATTTCTGATTTGAGAAGATTGTGCGCGGAGAAGGGAGTGAACCCATGGATTGAAGTAGATGGTGGAGTTGGTCCAGCAAATGCTTACAAGGTGATTGAGGCCGGAGCCAATGCACTGGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGATTATGCTGAAGCTATAAGAGGAATTAAAACCAGCAAAAGACCTGAAGCAGTCGCTGTGTGA 843 0.4342 MAATSSLCSSTLQSQINGFYLRKTSLLHPPSLTFSRRKFSTTVKASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPATPLTAIEYILDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRPEAVAV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01973 280 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 15 267 IPR000056 GO:0005975|GO:0016857
Cca11g01973 280 SUPERFAMILY Ribulose-phoshate binding barrel 51 273 IPR011060 -
Cca11g01973 280 Gene3D Aldolase class I 47 276 IPR013785 -
Cca11g01973 280 PANTHER - 15 267 - -
Cca11g01973 280 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 190 212 IPR000056 GO:0005975|GO:0016857
Cca11g01973 280 CDD RPE 58 270 IPR000056 GO:0005975|GO:0016857
Cca11g01973 280 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 86 100 IPR000056 GO:0005975|GO:0016857
Cca11g01973 280 TIGRFAM rpe: ribulose-phosphate 3-epimerase 59 270 IPR026019 GO:0004750|GO:0006098
Cca11g01973 280 Hamap Ribulose-phosphate 3-epimerase [rpe]. 56 272 IPR026019 GO:0004750|GO:0006098
Cca11g01973 280 Pfam Ribulose-phosphate 3 epimerase family 59 257 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01973 Cca-Chr11 45149031 45154426 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01973 K01783 - gmx:100817791 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01973 11 45149031 45154426 Cca11g01973 11 45149031 45154426 ECH