Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01968 ATGAGGCGAGAAATGAGTTCTGCTTCTGGTTCgagtagcagagaagagaggagaagaaaggcgaggTCCACGTCACCACTGAAGGATCGATCCAGAACCTCTTCATCTAACTTGGCCTCTTCGCCCAAACGAAGCACCTCACCCTCTGCTACTCTTCTCGACGTCGACGATGACCTCTTTCGCGATTATCCCAACCCTAACCCTAGCCCTCGAAGCTTCCCTCACAACGTTAAACAGAAATGCTGGGAAAAGGCCGACAAGGTCAAAGGACGAGACCCCGAACGCTGGCGCAGGGACGCCCTCGGCAACATCGTCTTCCGCAAGCTCCTAGGTTGCCCTGGCTGTCTCTGTCACGACTACGATCACATTCTCCCTTACTCTAAGGGGGGTGAAAGCACACTGGAAAACTGTCAAGTATTACAGGCAACAGTTAATCGTGCAAAGGGTAATCGAACAGAGATCTCCAAAGCTGAACTTATTCAGAAGAGTTCTTATTGCAGGGTTTCAGATCGTGATATGGATCTTCTGGAACTGTCAGCCTATGGAAATGTCCGGCGGGGACAGGATTCTGGGGGATGTAGAATCCAATGA 591 0.4788 MRREMSSASGSSSREERRRKARSTSPLKDRSRTSSSNLASSPKRSTSPSATLLDVDDDLFRDYPNPNPSPRSFPHNVKQKCWEKADKVKGRDPERWRRDALGNIVFRKLLGCPGCLCHDYDHILPYSKGGESTLENCQVLQATVNRAKGNRTEISKAELIQKSSYCRVSDRDMDLLELSAYGNVRRGQDSGGCRIQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01968 196 PANTHER HNH ENDONUCLEASE 13 196 - -
Cca11g01968 196 Pfam HNH endonuclease 118 151 IPR002711 GO:0003676|GO:0004519
Cca11g01968 196 Gene3D - 75 166 - -
Cca11g01968 196 MobiDBLite consensus disorder prediction 1 27 - -
Cca11g01968 196 MobiDBLite consensus disorder prediction 28 52 - -
Cca11g01968 196 MobiDBLite consensus disorder prediction 1 77 - -
Cca11g01968 196 CDD HNHc 104 149 IPR003615 -
Cca11g01968 196 PANTHER HNH ENDONUCLEASE 13 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01968 Cca-Chr11 45071109 45073911 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01968 - - gmx:100500174 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01968 11 45071109 45073911 Cca11g01968 11 45071109 45073911 ECH