Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01965 ATGGAGTTCAATCTTGCATTAGTTATTGTAGTAACCACCATTTTGGGAATTGGGCTTGAAGGATGCGATAGCAAGATTGTGCAGTTCATTTTTGGAGACTCCCTCTCGGATGTTGGAAATAACATGCATCTCTCCAGAAGCCTTGCTCAGGCAAGCTTGCCTTGGTATGGTATTGACATGGGTAATGGGTTACCTAATGGAAGGTTCACTAATGGTCGCACAGTTGCTGACATAATAGGTGACAAGATGGGCCTCCCTAGGCCTCCTGCATTCCTGGACCCATCTGTAAATGAAGAAGTTATATTAGAAAACGGTGTGAACTATGCTTCAGGTGGAGGCGGTATCTTGAATGAAACTGGTGCCTATTTTATCCAAAAGTTTTCCCTGGACAAACAAATTGAGCTATTCCAGGGGACACAAGAGTTAATTAGAGCCAAAATTGGTAAAAGGGCCGCAACCAAGTTTTTCCAGGAAGCTCGTTATGTTGTTGCTTTAGGGAGCAATGACTTCATCAACAACTACTTGATGCCTGTTTACAGTGATTCATGGACATACAATGATGGAACCTTCATGGACTACTTGATAGGAACACTGCAAAGACAACTAAAGCTACTTCATAGTTTAGGAGCAAAACAACTAGTGGTTTTTGGGTTGGGTCCAATGGGCTGCATTCCCCTTCAAAGGGTGCTTACTACAACTGGGAATTGTCGAGAAAAGGCAAACAAGCTGGCTCTTACCTTCAATGAAGCTGCAAGCAAGTTAGTAGATGAATTGGCGAAGCAATTTCCTGATTCAACCTATAGATTTGGAGATGCATATGATGTTGTTTATGATGTGATTAGCAATCCAAATAATTATGGATTCCAAAACTCAAACTCGCCATGTTGTTCCTTTTGGAATATTCGACCTGCCCTTACATGTGTACCTGCATCAAGTTTGTGCAAAGATAGAAGTAAATATGTGTTTTGGGATGAGTACCACCCCACAGACAGTGCTAATGAACTAATTGCAAATGAACTCATCAAGAAATTTGGACTTTTAAATGCTGATCAAGGGGGTGCACCTTCACCAGCACCTGCTTTTGCTCCATCTCCAGAAGACTAA 1104 0.4185 MEFNLALVIVVTTILGIGLEGCDSKIVQFIFGDSLSDVGNNMHLSRSLAQASLPWYGIDMGNGLPNGRFTNGRTVADIIGDKMGLPRPPAFLDPSVNEEVILENGVNYASGGGGILNETGAYFIQKFSLDKQIELFQGTQELIRAKIGKRAATKFFQEARYVVALGSNDFINNYLMPVYSDSWTYNDGTFMDYLIGTLQRQLKLLHSLGAKQLVVFGLGPMGCIPLQRVLTTTGNCREKANKLALTFNEAASKLVDELAKQFPDSTYRFGDAYDVVYDVISNPNNYGFQNSNSPCCSFWNIRPALTCVPASSLCKDRSKYVFWDEYHPTDSANELIANELIKKFGLLNADQGGAPSPAPAFAPSPED 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01965 367 Gene3D SGNH hydrolase 27 345 IPR036514 -
Cca11g01965 367 SUPERFAMILY SGNH hydrolase 107 343 - -
Cca11g01965 367 CDD SGNH_plant_lipase_like 29 343 IPR035669 -
Cca11g01965 367 Pfam GDSL-like Lipase/Acylhydrolase 29 339 IPR001087 GO:0016788
Cca11g01965 367 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 357 - -
Cca11g01965 367 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01965 Cca-Chr11 45042865 45045554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01965 29 340 Acyl Lipid Metabolism Gene Families AT4G10950 31.210 1.88e-58 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01965 - - gmx:100776733 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01965 11 45042865 45045554 Cca11g01965 11 45042865 45045554 ECH