Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01964 ATGAACTCCATTGCCTTCAAGTCCTTCGTCGGCCTCCGCCACTCCTCGCCGGAGGCGCCGCCCCTCGCCGCGCACCGGAGTCCCCGCGCTCCCCAGAGAAAGTTCAGGGTGGTGGCCGGGAAGTTCAGCCCCAAGCTCCCGGGGCGGAACCTCCGCGTGGCGGTGGTGGGCGGCGGCCCGGCGGGGGNNNNNNNNNNGGGGGGAGCCGCGGCGGAGACGCTGGCGAAGGGCGGCGTGGAGACTTTCCTGATAGAGCGGAAGATGGACAACTGCAAGCCGTGCGGCGGCGCCATTCCGCTGTGCATGGTGGGGGAGTTCGACCTGCCGCTGGACATCATCGACCGGCGCGTGACGAAGATGAAGATGATATCGCCGTCGAACGTGGCGGTGGACATTGGGAGGACGCTGAAGCCGCACGAGTACATCGGCATGGTGCGGCGTGAGGTGCTGGACTCTTACCTGAGGGACCGCGCCAAGCAGAACGGTGCTAACGTCATCAACGGGTTGTTCTTGAAAATGGATATTCCTAAGGATAGTAACTCCCCCTACGTTCTTCATTACTCTAGCTACGATGTCAAAACCGGTGGGGTTGGCCAGAAGAGTACCTTGGAAGTTGATGCTGTCATTGGTGCTGACGGGGCTAACTCCCGAGTGGCCAAGTCTATTGATGCTGGAGACTATGACTATGCCATCGCTTTTCAGGAGAGGATAAAAATCCCAGATGAGAAGATGGTGTATTACGAGAATCTTGCTGAGATGTACGTGGGTGATGATGTTTCTCCAGATTTCTACGGGTGGGTGTTTCCAAAATGTGACCATGTGGCTGTTGGCACGGGCACTGTGACACACAAGGGTGACATCAAGAAGTTCCAACTAGCAACAAGGAAAAGAGCAGAGGACAAGATTCTGGGAGGCAAGATCATCCGGGTGGAGGCTCACCCTATCCCGGAACACCCTCGGCCGCGGCGGTTGTTGGGGAGAGTGGCGCTGGTGGGCGACGCAGCCGGCTATGTGACCAAATGCTCCGGAGAGGGGATCTACTTTGCAGCCAAGAGTGGGAGGATGTGTGCAGAGGCAATTGTGGAAGGCTCAGAGAATGGGAAAAGGATGGTGGAAGAAGGGGACTTGAGGAAGTACTTGGAGAAGTGGGACAAGACTTATTGGCCTACTTACAAGGTCTTGGATGTGCTTCAGAAGGTGTTTTATAGGTCCAACCCTGCCAGGGAAGCGTTTGTGGAGATGTGTGCTGATGATTATGTGCAGAAGATGACCTTTGATAGCTATTTGTACAAGACAGTTGTACCTGGCAACCCATTGGAGGATCTCAAATTGGCCATTAACACCATCGGGAGCTTAGTCAGGGCCAATGCCATAAGGAGGGAGATGAACAAACTCAATCATTCGTCTCATCTCAAAGGCGGAGATTTCAAACCCAACTTCGCTTCTTTAAAACTCTCTTCATTCCTCCATTCCCAGGTTAAGATGGCAGCGGCACCAGCAGTTACCTTCACAATTGGAAGCACCGGTTCCCTCGGCCAGAGAGGGGCCTCATTCCCTCAATCAAAGCCTCTTGGACTGAGATTCAACTCCCACAGTCATTTGAAGGCTTTCTGTGGCCTCAAGGCCATGTCATCTGTGAGATGTGACTCCGAATCATCGTTTTTTGGTAGCAAAACGGGTGCTGCTCTGCATGCATCTTTTGCATCCAAAGCTCAAAAGGAGAGTCAAAACTTCAACTACCGCTTCCAGCCTCAGGCTTCATACAAAGTTGCAGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCTCTGGCGCTTCTCATCAAGATGTCCCCTTTAGTTTCCGACCTGCATCTCTATGATATTGCAAATGTTAAGGGAGTTGCTGCTGATCTCAGTCACTGCAACACACCCTCTCAGCCCGGCATGACTCGTGACGACCTTTTCAACATCAATGCCGGCATAGTCAGGGACTTGGTTTCTGCTGTTGCAGATAATTGCCCTGGTGCTTTCATTCAAATTATCAGCAACCCTGTGAACTCTACTGTGCCTATTGCTGCAGAAGTTTTGAAACAGAAGGGTGTCTATGATCCTAAAAAGCTCTTTGGTGTTACCACACTGGATGTTGTGAGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGATGTCGATGTCCCTGTTGTTGGGGGACACGCTGGGATTACCATTCTTCCTCTGTTGTCGAAGACAAGGCCCTCGGCGAGTTTCACTGATGAAGAAATTGAGGAGTTAACTGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCGGGTGCAGGGTCTGCTACCTTGTCAATGGCGTATGCAGCAGCTCGATTCGTTGAATCGTCTCTTCGCGCGCTTGATGGAGATGGGGATGTGTATGAGTGCGCATATGTGCAATCAGATTTGACTGACCTTCCATACTTTGCTTCAAGGGTGAAGCTTGGAAGGAAAGGAGTCGAGGCTTTAATTCCATCTGACCTCCAAGGGTTAACTGATTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAACTCAAGGCCAGCATAGAGAAGGGGGTTGCTTTTGCTCAGAAGCAAGCTGTTGCTGCTTAA 2634 0.5205 MNSIAFKSFVGLRHSSPEAPPLAAHRSPRAPQRKFRVVAGKFSPKLPGRNLRVAVVGGGPAGXXXXGGAAAETLAKGGVETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDSYLRDRAKQNGANVINGLFLKMDIPKDSNSPYVLHYSSYDVKTGGVGQKSTLEVDAVIGADGANSRVAKSIDAGDYDYAIAFQERIKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLLGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADDYVQKMTFDSYLYKTVVPGNPLEDLKLAINTIGSLVRANAIRREMNKLNHSSHLKGGDFKPNFASLKLSSFLHSQVKMAAAPAVTFTIGSTGSLGQRGASFPQSKPLGLRFNSHSHLKAFCGLKAMSSVRCDSESSFFGSKTGAALHASFASKAQKESQNFNYRFQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADLSHCNTPSQPGMTRDDLFNINAGIVRDLVSAVADNCPGAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECAYVQSDLTDLPYFASRVKLGRKGVEALIPSDLQGLTDYEQKALEALKPELKASIEKGVAFAQKQAVAA 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01964 877 Gene3D - 704 875 IPR015955 GO:0003824|GO:0016616
Cca11g01964 877 TIGRFAM GG-red-SF: geranylgeranyl reductase family 53 360 IPR011777 GO:0016628
Cca11g01964 877 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 637 871 IPR010097 GO:0006099|GO:0030060
Cca11g01964 877 CDD MDH_glyoxysomal_mitochondrial 588 870 IPR010097 GO:0006099|GO:0030060
Cca11g01964 877 ProSitePatterns Malate dehydrogenase active site signature. 703 715 IPR001252 GO:0006108|GO:0016615
Cca11g01964 877 Gene3D - 51 471 IPR036188 -
Cca11g01964 877 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 589 702 IPR036291 -
Cca11g01964 877 TIGRFAM BchP-ChlP: geranylgeranyl reductase 52 454 IPR010253 GO:0015979|GO:0015995|GO:0045550
Cca11g01964 877 TIGRFAM ChlP: geranylgeranyl reductase 51 454 IPR011774 GO:0045550
Cca11g01964 877 Pfam lactate/malate dehydrogenase, NAD binding domain 637 702 IPR001236 GO:0016491
Cca11g01964 877 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 40 467 - -
Cca11g01964 877 Gene3D - 638 703 - -
Cca11g01964 877 SUPERFAMILY LDH C-terminal domain-like 703 870 IPR015955 GO:0003824|GO:0016616
Cca11g01964 877 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 704 869 IPR022383 GO:0016616
Cca11g01964 877 PANTHER OS01G0265000 PROTEIN 40 467 - -
Cca11g01964 877 SUPERFAMILY FAD/NAD(P)-binding domain 51 434 IPR036188 -
Cca11g01964 877 Gene3D - 583 637 - -
Cca11g01964 877 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 204 219 - -
Cca11g01964 877 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 325 340 - -
Cca11g01964 877 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 52 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01964 Cca-Chr11 45026872 45034452 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01964 K10960 - gmx:100779933 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01964 11 45026872 45034452 Cca11g01964 11 45026872 45034452 ECH