Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01963 ATGGCCTTAGAACCGCTGATTTCTGCCATAAAATCCGTTTGCCATAAGACCCATTTGTTCCAAATCCACGCTCACATTATACGCACAAAGCTCATTCAACACCCCACTGTTTCTCTTCACTTCTTGTCCCGTGTAGCTCTCTCTGGTCCTTTGCAAGATGCCACCTATTCCCACCGCTTCTTTCAGCAACTCAGCCACCCTTTGCTTTCCCATTACAACACCATGATCAGGGCCTCTTCCATCAGTCATTCACCGCAAAAGGCTCTTTTTTTATACCGAGACATGAGAAGACGAGGCATTGCTGCAGACCCTTTATCCTCTTCCTTTGCTGTTAAGTCTTGCATAACGTTTCTGTATCTTCTTGGAGGGATTCAGCTTCATTGCAACATCTTCAAAGACGGGCACCAATCTGATACCCTTTTGCTCACTGCTCTCATGGACTTGTATTCACAGTGCCAGAGGGGCCGTGATGCGTGTAAGGTGTTTGATGAGATGTCTCAGAGGGACACTGTTGCTTGGAACGTCATGATCTCGTGCTGTATTCGAAATAATAGGACTCGGGATGCTTTGAGTTTGTTTGATGTTATGCAGAGTTCGAGATATGAATGTGAGCCTGATGATGTTACTTGTTTGCTTCTTCTTCAGGCTTGCGCTCATTTGAATGCCTTGGAATTTGGTGAACGAATTCATGGTTATATTGTGGAACGTGGTTATGGGGGTGCTCTCAATTTATCTAATGCTCTTGTATCTATGTATTCGCGGTGTGGTTGTTTAGATAAGGCTTATGAAGTGTTTAAGGGGACAGGCGATAAGAGTGTGGTTTCATGGAGTGCAATGATCTCTGGTTTGGCGAAGAATGGATATGGGAGAGAAGCTATTGAAGCTTTTGAAGAGATGCTGAGAATTGGCATTCGGCCTGATGATCAGACATTCACGGGTGTCCTTTCTGCTTGCAGTCATTCTGGAATGGTTGATGAGGGAATGTCATTTTTTGACCGTATGAGCAGAGAGTTTGGAATAACTCCCAACGTTCATCACTATGGCTGCATGGTTGATCTTTTGGGCCGTGCTGGCTTGCCTCACAAGGCTTATCATCTTATAATGTCGATGGCGGTGAAGCCAGATTCCACAATATGGAGGACCCTGCTTGGGGCTTGCAGAATTCATGGCCATGTTACACTTGGTGAACGAGTAATTGAACATTTGATTGAGTTGAAGGCTCAAGAAGCAGGGGATTATGTTTTACTTTTGAATATATATTCTTCTGCTGGACACTGGGAAAAGGTAGCAGAGGTGAGAAAATTGATGAAAGATAAAGCAATCCAAACCACACCTGGTTGTAGCACAATTGAATTGAAAGGAATAGTACACGAGTTTGTTGTGGACGACGTTTCACATTCGAGAAATCATGAAATTTACGAGACACTGGATGAGATTAATAAGCAGCTGAAAATTGCTGGTTATGTTGTTGAACTTTCATCCGAGTTACATAAGATGGATGACAAAGAAAAGGGGTATGTGCTCTCTCACCACAGTGAAAAGTTGGCCATTGCTTTTGGGGTTCTTGCTACACCACCTGGCACAACACTGAGAGTGGCCAATAATCTCCGTATATGTGTTGACTGCCACAATTTTCTGAAACTTTTTTCTGGGGTTTACAACCGTGATGTAATTCTTAGGGACCATAATCGGTTTCACCACTTCAGGGGAGGGCACTGTTCATGTAGCGACTATTGGTAG 1740 0.4385 MALEPLISAIKSVCHKTHLFQIHAHIIRTKLIQHPTVSLHFLSRVALSGPLQDATYSHRFFQQLSHPLLSHYNTMIRASSISHSPQKALFLYRDMRRRGIAADPLSSSFAVKSCITFLYLLGGIQLHCNIFKDGHQSDTLLLTALMDLYSQCQRGRDACKVFDEMSQRDTVAWNVMISCCIRNNRTRDALSLFDVMQSSRYECEPDDVTCLLLLQACAHLNALEFGERIHGYIVERGYGGALNLSNALVSMYSRCGCLDKAYEVFKGTGDKSVVSWSAMISGLAKNGYGREAIEAFEEMLRIGIRPDDQTFTGVLSACSHSGMVDEGMSFFDRMSREFGITPNVHHYGCMVDLLGRAGLPHKAYHLIMSMAVKPDSTIWRTLLGACRIHGHVTLGERVIEHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKDKAIQTTPGCSTIELKGIVHEFVVDDVSHSRNHEIYETLDEINKQLKIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAIAFGVLATPPGTTLRVANNLRICVDCHNFLKLFSGVYNRDVILRDHNRFHHFRGGHCSCSDYW 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01963 579 Pfam E motif 389 451 IPR046848 -
Cca11g01963 579 Pfam PPR repeat family 271 319 IPR002885 -
Cca11g01963 579 Pfam PPR repeat family 169 218 IPR002885 -
Cca11g01963 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 342 IPR002885 -
Cca11g01963 579 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Cca11g01963 579 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Cca11g01963 579 TIGRFAM PPR: pentatricopeptide repeat domain 171 202 IPR002885 -
Cca11g01963 579 TIGRFAM PPR: pentatricopeptide repeat domain 72 103 IPR002885 -
Cca11g01963 579 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 571 - -
Cca11g01963 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Cca11g01963 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Cca11g01963 579 PANTHER OS08G0434000 PROTEIN 6 571 - -
Cca11g01963 579 Pfam PPR repeat 346 370 IPR002885 -
Cca11g01963 579 Pfam PPR repeat 143 168 IPR002885 -
Cca11g01963 579 Pfam PPR repeat 71 100 IPR002885 -
Cca11g01963 579 Pfam PPR repeat 246 266 IPR002885 -
Cca11g01963 579 Pfam DYW family of nucleic acid deaminases 487 579 IPR032867 GO:0008270
Cca11g01963 579 Gene3D Tetratricopeptide repeat domain 70 238 IPR011990 GO:0005515
Cca11g01963 579 Gene3D Tetratricopeptide repeat domain 245 469 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01963 Cca-Chr11 45023777 45025639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01963 21 579 Glycoside Hydrolase AT3G49170 34.452 5.83e-118 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01963 - - gmx:100788135 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01963 11 45023777 45025639 Cca11g01963 11 45023777 45025639 ECH