Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01959 ATGTCAGACAAGAACATGGTTCCCTCAAGGTTTATATTTTGTGTGATGGTCATGGCTATGTTCCTTTTGGTCCTGTCTTCGTTTTCCCTCCTCCACTTGAGCAATCGCTCATTCATTCCTAGATCAATGTTGGAGCTTATTGTTGTCAACAACACATCACTTCACTTCAAACCCAATTTCAAGAGGCAACAAATAACACCCTCTCCCCTCCCTTCTGAAGATGCAAAAGTTCAACCACAAAGCTATCAACTTTATCATAATTCAAGCCAGAAACCAAGTTCTCCAAGGCAGCAGAGAAAGTCGGCATGTGACTCAACACGTGCTCTCTTAAGGGTGTTCATGTATGACTTACCTCCAGAGTTTCACTTTGGGTTGTTGGGTTGGAAGGGGAGTGTGAATCAAACATGGCCTAGTGTGAGTAACCCCAAACAAGTCCCACCATATCCAGGTGGGCTTAATTTACAGCATAGTGTGGAATACTGGCTCGTCCTTGATCTTCTGTCTTCAGACATTTCAAAAATTATCAGGCCTTGCAGTGCAATTAGAGTGCAGAATTCTAGTGAAGCAGATGTGATTTTTGTGCCATTTTTCTCCTCTCTGAGTTACAACCGGCATTCCAGAATCCATGGGAAGGAAAAAGTTAGTGTTAACAAAATGTTGCAAGAGAGATTGGTGCAGTTCCTAATGGAGAGGGAGGAATGGAAACGTTCAAGAGGGAAGGATCATGTGATTGTGGCCCACCATCCTAACAGCATGCTGTATGCAAGAAGAAACTTGGCTTCTGCCATGCTTGTGCTTGCAGATTTTGGAAGATACCCTTCAGAATTGGCAAATATTAAGAAAGATATAATAGCTCCATATAGGCATTTACTAAGCACTATACCAAGAGCTGAGTCAGCTTCATTTGAGGAACGTTCTACACTTCTGTATTTCCAGGGGGCAATATATAGGAAATCTGGAGGAGTTATTCGCCAACAACTATATTACCTCCTCAAAGATGAGAAAGATGTGCATTTTGCATTTGGAAGCTTCAGAAGAAATGGGATCAGTCAGGCAAGTCAGGGCATGGCCTTGTCCAAATTTTGCCCAAACATTGCTGGAGATACTCCATCCTCTAATCGCCTCTTTGATGCCATTGCGAGCCACTGTGTTCCTGTGATCATTAGTGACAAAATTGAGCTACCCTTTCAAGATGTTTTGGACTACTCAGAATTTGCCTTATTTGTCCAGGCATCAGATGCTGTGAGAAAAGGCTACCTGCTGAATCTCCTTCGTTCAATTAAGCCAGAGGAATGGACCAAGATGTGGGAAAGGTTAAAGGATATTACACAACACTTTGAGTATCAATATCCAAGCCAGCCTGGGGATGCAGTGAATATGATTTGGGAGGAAGTTGCACATAAGAAATCTTCACTACAGTTCAATTTGCATAGTAAAAATAGATACCAGAGATCTTAG 1458 0.4225 MSDKNMVPSRFIFCVMVMAMFLLVLSSFSLLHLSNRSFIPRSMLELIVVNNTSLHFKPNFKRQQITPSPLPSEDAKVQPQSYQLYHNSSQKPSSPRQQRKSACDSTRALLRVFMYDLPPEFHFGLLGWKGSVNQTWPSVSNPKQVPPYPGGLNLQHSVEYWLVLDLLSSDISKIIRPCSAIRVQNSSEADVIFVPFFSSLSYNRHSRIHGKEKVSVNKMLQERLVQFLMEREEWKRSRGKDHVIVAHHPNSMLYARRNLASAMLVLADFGRYPSELANIKKDIIAPYRHLLSTIPRAESASFEERSTLLYFQGAIYRKSGGVIRQQLYYLLKDEKDVHFAFGSFRRNGISQASQGMALSKFCPNIAGDTPSSNRLFDAIASHCVPVIISDKIELPFQDVLDYSEFALFVQASDAVRKGYLLNLLRSIKPEEWTKMWERLKDITQHFEYQYPSQPGDAVNMIWEEVAHKKSSLQFNLHSKNRYQRS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01959 485 PANTHER EXOSTOSIN FAMILY-LIKE PROTEIN 3 481 - -
Cca11g01959 485 MobiDBLite consensus disorder prediction 81 101 - -
Cca11g01959 485 Pfam Exostosin family 109 422 IPR040911 -
Cca11g01959 485 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 3 481 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01959 Cca-Chr11 44989969 44993218 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01959 - - gmx:100809635 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01959 11 44989969 44993218 Cca11g01959 11 44989969 44993218 ECH