Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01953 ATGGAAGAAGGATGGGTTTCTCTGCTGAGCAAGTGCAGCAGCCTGAAAGCCACGAAGCAAATCCACGCCAACATCTGCAAAACCGGTCTTCACACAGACCCTTTCGTCTTCGGCAAGCTCCTTCTCCACTGCGCCATCTCCATCACGGATGCTCTCCACTACGCTCTCCGTCTCTTCCACCACTTCCCCAACCCTGACACCTTCATGCACAACACCCTCATTCGCGCActctccctctcccaaacccctctcctctccctcCACCCCTTCATCCAACTGCGTCGCCAACCCACCCTCTTCCCCGACAGCTTCTCCTTCGCCTTCGCCCTCAAAGCCGTCGCCAACTCCCGCCACCTCAGCCCTGGCATTCAGCTCCACTCCCAGGCCTTCCGCCACGGCTTCGACGCCCACATCTTCGTTGGAACAACGCTGATCAGCATGTATGCCGAATGCGGTGATGCCGGCTCCGCGCGCCGGGTGTTCGACGAAATGTCTCAACCGAATGTTGTTGCGTGGAACGCTGCTGTCACCGCGGCTTTCCGTTGCGGCAACGTGGAAGGCGCGCGGGACGTGTTTGGGCGAATGCCGGTTCGGAATTTGACTTCCTGGAATGTGTTGCTTGCTGGTCACGCCAAAGCAGGTGAGCTTGGGTTGGCGAGGAGGGTTTTTGTTGAGATGCCTCTGAGAGATGATGTTTCTTGGAGCACTATTATTGTTGGGTTTGCTCATAATGGCTGCTTTGACGAGGCTTTTGGGTTTTTCAGGGAGTTGCTGCGCGAGGGAATTGGGATAAATGAGGTGAGCCTCACTGGGGTGTTGTCTGCTTGTGCTCAAGCTGGGGCTTTTGATTTTGGGAAGATTTTGCATGGGTTTGTGGAGAAAGCTGGGTTTCTTTATGTTGGTTCTGTGAACAATGCTCTCATAGATACCTACTCCAAGTGTGGGAATGTGGCTATGGCCAGGTTGGTCTTTCAGAATATGCCGGTGGCAGCGAGGAGCAATGTGTCTTGGACATCGATAATAGCGGGACTTGCGATGCAAGGTTATGGAGAAGAGGCAATACAGCTTTTTCATGAGATGGAAGAGTCTGGAGTTAGGCCAGATGGTATTACTTTTATATCGTTGCTGTATGCTTGCAGCCATAGTGGCTTGGTTGAGGAAGGGTGTGGTTTTTTTTCTAAGATGAAGAATTTGTATGGTATTGAACCTGCCATTGAGCATTATGGTTGCATGGTTGATTTGTATGGTCGAGCTGCTAGGTTGCAGAAGGCCTATGAATTTATATGTGAAATGCCAGTTTCGCCTAATGCCATCATTTGGAGGACTCTCCTTGGGGCTTGTAGCATTCATGGTAATATTGAATTGGCAGAGCTTGTGAAAGCGAGGCTTGCTGAAATGGATCCGGACAACTCTGGTGACCATGTACTGCTCTCAAATGTTTACGCCATTGCAGGGAAATGGAAGGATGTTGCCAGCATAAGAAGAACCATGACTGAACATAGTATGAAAAAAACTCCTGGTTGGAGCATGATTGAACTAGACAAGGTCATTTATGGTTTTGTGGCTGGTGAAAAGCCTAACGAGGTTACGGAGGAGGCTCATGAAAAGCTGAGGGAAATAATGTTGAGACTCAGAGCTGAAGCAGGTTATGCACCACAGCTAAAGAGTGTTCTGCATGATATTGAAGAGGAAGAAAAAGAAGATTCGGTTTCTAAGCACAGCGAGAAGCTTGCTGCAGCTTTTGGAATAGCAAAACTTCCCAAGGGAAGGATATTAAGAATTGTGAAGAACCTGAGAGTTTGTGGGGACTGCCATACTGTGATGAAGCTGATTTCTAAAGTTTATCAAGTAGAAATTATTGTGAGAGATAGAAGCCGCTTCCACTCATTCAAGGATGGATCTTGTTCTTGCAAAGATTACTGGTGA 1926 0.4803 MEEGWVSLLSKCSSLKATKQIHANICKTGLHTDPFVFGKLLLHCAISITDALHYALRLFHHFPNPDTFMHNTLIRALSLSQTPLLSLHPFIQLRRQPTLFPDSFSFAFALKAVANSRHLSPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDAGSARRVFDEMSQPNVVAWNAAVTAAFRCGNVEGARDVFGRMPVRNLTSWNVLLAGHAKAGELGLARRVFVEMPLRDDVSWSTIIVGFAHNGCFDEAFGFFRELLREGIGINEVSLTGVLSACAQAGAFDFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVAARSNVSWTSIIAGLAMQGYGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGFFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIELAELVKARLAEMDPDNSGDHVLLSNVYAIAGKWKDVASIRRTMTEHSMKKTPGWSMIELDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRAEAGYAPQLKSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGSCSCKDYW 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01953 641 PANTHER - 9 581 - -
Cca11g01953 641 Pfam PPR repeat 202 227 IPR002885 -
Cca11g01953 641 Pfam PPR repeat 305 327 IPR002885 -
Cca11g01953 641 Pfam PPR repeat 170 199 IPR002885 -
Cca11g01953 641 Pfam PPR repeat 232 262 IPR002885 -
Cca11g01953 641 Pfam PPR repeat 407 432 IPR002885 -
Cca11g01953 641 Pfam PPR repeat 142 165 IPR002885 -
Cca11g01953 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Cca11g01953 641 Pfam PPR repeat family 334 380 IPR002885 -
Cca11g01953 641 PANTHER OS01G0913400 PROTEIN-RELATED 9 581 - -
Cca11g01953 641 Gene3D Tetratricopeptide repeat domain 166 228 IPR011990 GO:0005515
Cca11g01953 641 Gene3D Tetratricopeptide repeat domain 229 287 IPR011990 GO:0005515
Cca11g01953 641 TIGRFAM PPR: pentatricopeptide repeat domain 335 368 IPR002885 -
Cca11g01953 641 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Cca11g01953 641 TIGRFAM PPR: pentatricopeptide repeat domain 202 227 IPR002885 -
Cca11g01953 641 Pfam E motif 450 512 IPR046848 -
Cca11g01953 641 Pfam DYW family of nucleic acid deaminases 549 641 IPR032867 GO:0008270
Cca11g01953 641 Gene3D Tetratricopeptide repeat domain 5 165 IPR011990 GO:0005515
Cca11g01953 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Cca11g01953 641 Coils Coil 527 547 - -
Cca11g01953 641 Gene3D Tetratricopeptide repeat domain 288 613 IPR011990 GO:0005515
Cca11g01953 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01953 Cca-Chr11 44905884 44907809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01953 102 641 Glycoside Hydrolase AT3G49170 36.565 8.00e-120 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01953 - - ccaj:109807035 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01953 11 44905884 44907809 Cca11g01953 11 44905884 44907809 ECH