Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01932 ATGTCGACTCCTGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCACCTGCGGGAATCAGTGGCGCTCCCCAGGATAACAACATAATGCTGTGGAATGCTGTAATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTTAAGTTGACACTCCAATTTTCTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACATTTATGCGGATGGAAGTATTTGTTTGGACATATTACAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACTTCTATCCAGTCATTGCTTTGTGATCCCAACCCAAATTCTCCTGCAAACTCAGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGCGAGTACAATCGGAGAATGGATCTTGGTTTCAACCTTGTGACCGTGAAGTTGACGTTTCTGCCTATGAATCAGTGTCTTTCATCATTTTCTTCCTCTCGCACCTTTAGAACCTGA 519 0.4355 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRMDLGFNLVTVKLTFLPMNQCLSSFSSSRTFRT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01932 172 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Cca11g01932 172 Pfam Ubiquitin-conjugating enzyme 8 141 IPR000608 -
Cca11g01932 172 SUPERFAMILY UBC-like 1 141 IPR016135 -
Cca11g01932 172 Gene3D Ubiquitin Conjugating Enzyme 1 145 IPR016135 -
Cca11g01932 172 SMART ubc_7 7 150 - -
Cca11g01932 172 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 141 - -
Cca11g01932 172 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Cca11g01932 172 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 141 - -
Cca11g01932 172 CDD UBCc 7 140 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01932 Cca-Chr11 44666139 44671273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01932 7 120 Miscellaneous Gene Families AT1G17280 31.092 8.24e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01932 K10573 - fve:101312627 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01932 11 44666139 44671273 Cca11g01932 11 44666139 44671273 ECH