Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01924 ATGACGACGCCGTTTCAGCAACCACCGCAAACCGTACGGAGGCTGGTCGTGGAAGTAATCGACGCGCGCAACCTGCTCCCGAAGGATGGACAAGGTAGCTCAAGCCCTTACGTGGTGGCGGACTTCGACGGCCAGAGAAAGCGAACCAACACCCGCTTCAAGGAGCTCAACCCGGTCTGGAACGAGCCTCTCGATTTCATCGTCTCCGACCCTGACAACATGGACTTCGAGGAGCTCGAAGTGGAGGTCTACAACGACAAGAAGTTCGGCAACGGAAGCGGCCGCAAGAACCACTTCCTCGGGAGAGTTAAACTCTACGGAACGCAGTTTTCCAGAAGAGGCGAAGAAGCTCTCGTCTACTACACGCTCGAGAAGAGGAGCGTCTTCAGTTGGATACGCGGCGAAATTGGCCTCAGGATTTATTACTACGATGAGATGCTATTTTCCAGAAGAGGCGAAGAAGCTCTCGTCTACTACACGCTCGAGAAGAGGAGCGTCTTCAGTTGGATACGCGGCGAAATTGGCCTCAGGATTTATTACTACGATGAGATGCTAGTTGAAGACGACAAACCACCGCCGCAACAACAGGAGGAGCAACCTGAGCAGAACAAGCCGCCGCCGGGAGCGGCTGTTGTCGAGGAGGGACGGGTTTTCGAGGCTCCTGGACCGATGGAGCAATGTATACCTCTTCCTACGGGTCCTCCTCATTCGCCGCGTGTGGTGGTGGTTGAAGAATCGCCGCCTCCGGTTGTGCATGTTTCGCAGGATCCGCCGTTGCCGGGAATGTGCGAGCCTCCGGAAATGCAGTTCCATCCGGAGGTGAGGAAAATGCAGGCCAACAGAGGGGAGAGGGTGAAGATATTCAAGAGGCCGAACGGTGATTACTCGCCTAAGGATATTTCTGGTAAGAAAACTGGCGCCGAGTCCGAGAGGGTTCATCCGTTCGATCTCGTGGAGCCTATGCAGTATCTGTTCGTCCGGATAGTGAAAGCTCGCGGGCTTGCTCCTCCCAGTGAAAGCCCATTTGTGAAGGTCAGAACGTCCAGCCACTTCGTGAGATCCAAGCCCGCCAGTTACCGCCCCAACGAGCCCGCCGACTCGCCTGAGTGGAACCAGGTGTTTGCGTTGGGTTACAACAAGACCGACGTCAACAGCGCCACGCTGGAGATTTCCGTTTGGGATTCTCCCACGGAGAATTTTCTCGGTGGTGTTTGCTTTGATCTTTCCGACGTTCCGGTTAGAGATCCTCCGGATAGTCCCTTGGCGCCGCAATGGTACCGCCTCGAAGGAGTCACCGCCGATCAGAATCCCGGGAGAGTTGCCGGCGACATTCAGCTCTCCGTGTGGATCGGGACGCAATCCGACGACGCGTTCCCGGAAGCGTGGAGCTCAGATGCACCGTACGTAGCGCACACTCGCTCCAAGGTTTATCAGTCACCGAAGCTCTGGTACCTCCGCGTGACGGTGGTGGAGGCGCAAGACCTGAACATTGCTCCGAATCTGCCTCCATTGACGGCGCCGGAAGTGAGGGTGAAGGTGCAATTAGGGTTCCAATCGCAGCGAACAAGGAGAGGATCCATGAACCACCGTAGCTTATCGTTCCACTGGAACGAGGACCTTCTCTTCGTGGCCGGGGAGCCTCTGGAAGATTCTGTGATCGTTCTCCTGGAAGATCGGACGAGCAAGGAAGCGGCGCTGCTAGGCCACATCGTGATTCCGCTAGGCTCAATCGAGCAGCGAATAGACGAGCGCCACGTGGCAGCGAAATGGTTCCCGTTGGAAGGCGGGCCCTACTGCGGGCGAGTCCACCTGCGCCTCTGCCTGGAGGGCGGGTACCACGTGCTGGACGAAGCGGCGCACGTGTGCAGTGACTTCCGTCCCACCGCCAAACAGTTATGGAAACCGGCGGTGGGGATTCTGGAACTGGGGATTCTGGGCGCTCGCGGCCTCCTCCCGATGAAATCGAAAGGCGCTGGAAAGGGCTCCACGGATGCTTACTGTGTGGCTAAGTATGGAAAAAAGTGGGTCCGAACCCGCACCGTAACCGACAGCTTCGATCCACGCTGGAACGAGCAGTACACGTGGCAGGTCTACGACCCCTGCACGGTTCTCACCGTTGGCGTGTTCGACAACTGGCGCATGTTCGCTGACGTGTCAGAAGACAGACCCGATTGCCGTATCGGGAAGGTACGAATACGTGTCTCTACGCTTGAGAGCAACAGAGTGTACACCAACTCCTACCCCCTCCTCGTGCTCACGCGAACCGGGTTGAAGAAAATGGGGGAAATCGAGTTGGCGGTTCGGTTCGCTTGCCCCTCCTTGTTGCCCGACACGTGTTCGGTCTACGGGCAGCCCCTGCTTCCTCGAATGCACTACCTCCGCCCGCTCGGGGTGGCCCAGCAGGAGGCTCTCCGCGGGGCCGCCACCAAGATGGTGGCGCAGTGGCTGGCGCGGTCGGAACCGGCGCTGGGGCACGAGGTGGTTCGTTACATGCTAGATGCGGATTCGCACGCGTGGAGCATGAGGAAGAGCAAGGCGAATTGGTTCAGAATCGTGGCGGTTTTGGCTTGGGCCGTTGGATTGGCCAAGTGGTTGGATGATATTAGAAGGTGGAAGAATCCAGTCACCACTGTCCTTCTCCACATCCTTTATTTGGTGCTTGTTTGGTACCCGGATTTGATTGTCCCCACTGGGTTCTTATACGTGGTCCTAATCGGGATTTGGTATTACCGGTTCAGGCCGAAAATACCGGCTGGGATGGATACCCGGTTATCTCAGGCTGAAGCGGTTGACCCGGATGAGTTGGACGAGGAATTCGACACCATGCCAAGTTCGAAACCACCAGATATAGTTCGAATGCGCTATGATAGGTTAAGAATGCTAGCAGCTAGGGTCCAAACAGTGTTGGGTGATTTTGCCACCCAGGGAGAGAGGCTTCAAGCCTTGGTTAGTTGGAGGGACCCTAGGGCTACCAAATTGTTCATTGGAGTCTGTCTTGCCATAACTGTCACACTCTATGCGATGCCGCCAAAAATGGTGGCTGTGGCCTTAGGGTTTTACTACCTCCGCCACCCCATGTTCCGGAACCCCATGCCCTCCGCCACCTTGAACTTTTTCCGGCGACTTCCCAGCCTGTCTGATCGCTTGATGTAG 3153 0.5674 MTTPFQQPPQTVRRLVVEVIDARNLLPKDGQGSSSPYVVADFDGQRKRTNTRFKELNPVWNEPLDFIVSDPDNMDFEELEVEVYNDKKFGNGSGRKNHFLGRVKLYGTQFSRRGEEALVYYTLEKRSVFSWIRGEIGLRIYYYDEMLFSRRGEEALVYYTLEKRSVFSWIRGEIGLRIYYYDEMLVEDDKPPPQQQEEQPEQNKPPPGAAVVEEGRVFEAPGPMEQCIPLPTGPPHSPRVVVVEESPPPVVHVSQDPPLPGMCEPPEMQFHPEVRKMQANRGERVKIFKRPNGDYSPKDISGKKTGAESERVHPFDLVEPMQYLFVRIVKARGLAPPSESPFVKVRTSSHFVRSKPASYRPNEPADSPEWNQVFALGYNKTDVNSATLEISVWDSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGVTADQNPGRVAGDIQLSVWIGTQSDDAFPEAWSSDAPYVAHTRSKVYQSPKLWYLRVTVVEAQDLNIAPNLPPLTAPEVRVKVQLGFQSQRTRRGSMNHRSLSFHWNEDLLFVAGEPLEDSVIVLLEDRTSKEAALLGHIVIPLGSIEQRIDERHVAAKWFPLEGGPYCGRVHLRLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPAVGILELGILGARGLLPMKSKGAGKGSTDAYCVAKYGKKWVRTRTVTDSFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADVSEDRPDCRIGKVRIRVSTLESNRVYTNSYPLLVLTRTGLKKMGEIELAVRFACPSLLPDTCSVYGQPLLPRMHYLRPLGVAQQEALRGAATKMVAQWLARSEPALGHEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAVGLAKWLDDIRRWKNPVTTVLLHILYLVLVWYPDLIVPTGFLYVVLIGIWYYRFRPKIPAGMDTRLSQAEAVDPDELDEEFDTMPSSKPPDIVRMRYDRLRMLAARVQTVLGDFATQGERLQALVSWRDPRATKLFIGVCLAITVTLYAMPPKMVAVALGFYYLRHPMFRNPMPSATLNFFRRLPSLSDRLM 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01924 1050 ProSiteProfiles C2 domain profile. 304 426 IPR000008 -
Cca11g01924 1050 Gene3D C2 domain 636 772 IPR035892 -
Cca11g01924 1050 CDD C2B_MCTP_PRT_plant 323 452 - -
Cca11g01924 1050 CDD C2C_MCTP_PRT_plant 484 627 - -
Cca11g01924 1050 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 638 790 IPR035892 -
Cca11g01924 1050 ProSiteProfiles C2 domain profile. 463 591 IPR000008 -
Cca11g01924 1050 SMART C2_3c 484 586 IPR000008 -
Cca11g01924 1050 SMART C2_3c 639 746 IPR000008 -
Cca11g01924 1050 SMART C2_3c 14 119 IPR000008 -
Cca11g01924 1050 SMART C2_3c 323 420 IPR000008 -
Cca11g01924 1050 Pfam Plant phosphoribosyltransferase C-terminal 895 1050 IPR013583 -
Cca11g01924 1050 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 144 IPR035892 -
Cca11g01924 1050 CDD C2D_MCTP_PRT_plant 639 766 - -
Cca11g01924 1050 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 148 1050 - -
Cca11g01924 1050 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 10 147 - -
Cca11g01924 1050 Gene3D C2 domain 469 608 IPR035892 -
Cca11g01924 1050 Gene3D C2 domain 316 449 IPR035892 -
Cca11g01924 1050 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 483 629 IPR035892 -
Cca11g01924 1050 Gene3D C2 domain 10 154 IPR035892 -
Cca11g01924 1050 MobiDBLite consensus disorder prediction 188 209 - -
Cca11g01924 1050 ProSiteProfiles C2 domain profile. 1 120 IPR000008 -
Cca11g01924 1050 PANTHER BNAA10G16860D PROTEIN 148 1050 - -
Cca11g01924 1050 CDD C2A_MCTP_PRT_plant 14 144 - -
Cca11g01924 1050 PANTHER BNAA10G16860D PROTEIN 10 147 - -
Cca11g01924 1050 Pfam C2 domain 483 593 IPR000008 -
Cca11g01924 1050 Pfam C2 domain 14 106 IPR000008 -
Cca11g01924 1050 Pfam C2 domain 638 749 IPR000008 -
Cca11g01924 1050 Pfam C2 domain 323 426 IPR000008 -
Cca11g01924 1050 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 323 468 IPR035892 -
Cca11g01924 1050 ProSiteProfiles C2 domain profile. 621 747 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01924 Cca-Chr11 44579854 44583817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01924 2 1050 Lipid Metabolism Gene Families AT1G74720 69.333 0.0 1545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01924 - - gmx:100783882 1895.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01924 11 44579854 44583817 Cca11g01924 11 44579854 44583817 ECH