Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01922 ATGGGGAATCTTTTTTGTTGTGTGCAAGTTGATCAATCTACGGTGGCTATAAAAGAAAGATTTGGACGATTTGAGAAGGTGCTTCAGCCAGGATGCCATTGCATGCCATGGTTCCTTGGAAAACAACTTGCAGGTCATCTGTCTCTTCGGTTACAGCAATTGGATCTTCGATGTGAGACCAAGACAAAGGATAATGTCTTTGTCAATGTTGTTGCTTCGATTCAATATCGTGCCCTGGCAGAGAAGGCCAATGATGCTTTTTACAAACTTAGCAATACTAAGACCCAAATTCAAGCCTATGTTTTTGATGTAATTAGGGCAAGTGTTCCAAAACTCAACTTGGATGATGCTTTTGAGCAGAAAAATGAAATTGCCAGAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGGTATGAAATTGTTCAAACACTGATTGTTGATATAGATCCAGATGAGCATGTGAAGCGGGCTATGAATGAAATCAACGCTGCTGCAAGATTGAGGGTGGCAGCTAATGAAAAGGCAGAGGCTGAGAAGATCTTGCTAATTAAACGAGCCGAGGGTGAGGCTGAGTCTAAGTATCTCTCTGGGCTGGGTATTGCTCGCCAACGTCAAGCAATTGTGGACGGATTGAGAGACAGTGTGCTTGGATTCTCAATTAATGTACCTGGGACGACTGCAAAAGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGAAATTGGTGCTGCCTCCAAGTCTTCTGCTGTGTTCATTCCACATGGACCTGGTGCTGTTCGCGATGTAGCTACCCAAATTCGTGATGGACTTCTTCAGGCTTCTCATGGGTAG 855 0.4363 MGNLFCCVQVDQSTVAIKERFGRFEKVLQPGCHCMPWFLGKQLAGHLSLRLQQLDLRCETKTKDNVFVNVVASIQYRALAEKANDAFYKLSNTKTQIQAYVFDVIRASVPKLNLDDAFEQKNEIARAVEEELEKAMSAYGYEIVQTLIVDIDPDEHVKRAMNEINAAARLRVAANEKAEAEKILLIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASHG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01922 284 Coils Coil 114 138 - -
Cca11g01922 284 SMART PHB_4 5 165 IPR001107 -
Cca11g01922 284 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 1 283 - -
Cca11g01922 284 PANTHER HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1-LIKE 1 283 - -
Cca11g01922 284 SUPERFAMILY Band 7/SPFH domain 46 171 IPR036013 -
Cca11g01922 284 CDD SPFH_like_u4 10 278 - -
Cca11g01922 284 Pfam SPFH domain / Band 7 family 9 182 IPR001107 -
Cca11g01922 284 Coils Coil 157 177 - -
Cca11g01922 284 Gene3D Band 7 domain 42 167 IPR036013 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01922 Cca-Chr11 44567230 44571311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01922 - - gmx:100804982 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01922 11 44567230 44571311 Cca11g01922 11 44567230 44571311 ECH