Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01915 ATGAACCATATTGAGAAAAGAGAGAGCGGGGTAGAGACTATGGAGAAAAATGAGAAGGAAAGTGTGACAGATGAGGAACCAAAGGTTAAATACAGAGGCTGGAAAGTCATGCCCTTTATCATTGGGAATGAAACTTTTGAGAAGCTAGGAACCATTGGTACCTTGGCCAACCTCTTGGTGTATCTTACAACTGTGTTCAACTTGAGCAGTATTACAGCTACAAATATTATCAACATCTTCAATGGCAGTGCCAGTCTATCTACCTTGCTTGGGGCATTTCTTTGTGACACATATTTTGGACGCTACAAGACACTTGGATTCTCCACAATTGCTTCCTTTCTGGGGTTGCTTGTTATACAACTAACAGCATGGATTAAGAAAATGCATCCACCTGAGTGTGGAAGAGAGAAGATGACATGCACAGGCCCAACTGCAGGGCAAATGGCCTTTCTACTAGCTGGATTTGGACTTCTAATAGTGGGAGCTGCAGGGATCAGACCTTGTAACTTAGCATTTGGAGTTGATCAGTTCAACCCCAACACTGAGTCTGGAAAGAAGGGAATCAATAGCTTCTTCAATTGGTACTTCTTTACCTACACATTTGCTGTCATGGTGTCTTCGTCACTCATTGTCTACATACAGTCAAACGTGAGTTGGGCTGTGGTTAAAGCAACAGGTCCAGCTCCAGTCACAAGTATAGTTCAAGTTATAGTTGTGGCTATAAAGAAAAGAAGTCTGAATCTACAACAATTTACATGGGATTCTCTCTTTACCTATATTTCTCCCCAGTCTATTAACTCCAAGCTTCCTCACACGTCTCAGTTCAGGTTCCTTGACAAAGCTGCTATCATAACTCCAGAAGATGGTATAAACCCTGACGGGTCAGCATCCGATCCTTGGAGGCTGTGCAGCATGCAACAAGTGGAAGAGATGAAATGCTTGCTGAGACTGATTCCCATTTGGTTTTCAGGCATTTTCTTCTACGTTGCCCTCGTCCAACAGAGCACAATGCTGATCTTCCAAGCCCTTCAATCCGACAGAAGCGTCCTCAATACAAGCTTCAAGATCCCAGCAGCATCCTACACCATCTTCCAGATGATGAGCCTCACCATATGGCTTCCCATCTACGACCGAATAATCGTGCCTTCACTCCAAAGGGTCACAAAGAAAGAGGGTGGCATCACGGTTCTTCAAAGAATGGGCATTGGCATGTTCCTCTCTATACTCTGCATGATGTTGTCTGGTGTGGTGGAAGAGCGGAGAAGGGCTTTGGCTTTAAGGACTTTGGCTTTGAACAACCCTATAGGAGTGGAACCAAGAAAAGGTGCCATTTCTCCAATGTCGGGTCTGTGGTTGATTCCTCAGCTAACACTGGCGGGACTAGCTGATGCATTCACTGTTGTTGGACAAGTTGAGTTTTTCTATAAACAGTTTCCTGAGAACATGAAAAGCCTTGCAGGGTCTCTTTTCTTCTGTGGCTTAGCAGGATCAAGCTATTTGAGTAGTTTGCTCATTTCTATTATACATAAGCTCACAGCTAAGTCTTCAACTGGGAATTGGTTACCTCAGGATCTCAACAAGGGGAGATTGGATTATTTTTACTATGTCATAACTGTTATAGAAGTTGTTAACTTGGGTTACTTTATATTGTGTGCCAAGTGGTATAAATACAAAGGGGATGGCACTAGCAGCAGTAGCAATAGTATTGAACTAGATCAAGTTTCCAAACAGTCTGAAAAAACTGTTAATGGTGTCTAG 1758 0.4312 MNHIEKRESGVETMEKNEKESVTDEEPKVKYRGWKVMPFIIGNETFEKLGTIGTLANLLVYLTTVFNLSSITATNIINIFNGSASLSTLLGAFLCDTYFGRYKTLGFSTIASFLGLLVIQLTAWIKKMHPPECGREKMTCTGPTAGQMAFLLAGFGLLIVGAAGIRPCNLAFGVDQFNPNTESGKKGINSFFNWYFFTYTFAVMVSSSLIVYIQSNVSWAVVKATGPAPVTSIVQVIVVAIKKRSLNLQQFTWDSLFTYISPQSINSKLPHTSQFRFLDKAAIITPEDGINPDGSASDPWRLCSMQQVEEMKCLLRLIPIWFSGIFFYVALVQQSTMLIFQALQSDRSVLNTSFKIPAASYTIFQMMSLTIWLPIYDRIIVPSLQRVTKKEGGITVLQRMGIGMFLSILCMMLSGVVEERRRALALRTLALNNPIGVEPRKGAISPMSGLWLIPQLTLAGLADAFTVVGQVEFFYKQFPENMKSLAGSLFFCGLAGSSYLSSLLISIIHKLTAKSSTGNWLPQDLNKGRLDYFYYVITVIEVVNLGYFILCAKWYKYKGDGTSSSSNSIELDQVSKQSEKTVNGV 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01915 585 MobiDBLite consensus disorder prediction 1 24 - -
Cca11g01915 585 SUPERFAMILY MFS general substrate transporter 22 556 IPR036259 -
Cca11g01915 585 PANTHER PEPTIDE/NITRATE TRANSPORTER 224 566 - -
Cca11g01915 585 Pfam POT family 227 520 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca11g01915 585 Pfam POT family 102 221 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca11g01915 585 CDD MFS_NPF1_2 37 555 - -
Cca11g01915 585 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 17 221 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca11g01915 585 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 224 566 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca11g01915 585 Gene3D MFS general substrate transporter like domains 6 562 IPR036259 -
Cca11g01915 585 PANTHER PEPTIDE/NITRATE TRANSPORTER 17 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01915 Cca-Chr11 44475455 44479102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01915 10 582 Organic Solute Cotransporters AT5G62680 53.833 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01915 - - gmx:100807382 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01915 11 44475455 44479102 Cca11g01915 11 44475455 44479102 ECH