Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01909 ATGCAGACTATGCTTCGAGCGAAGCAGATCAGTGCACTTTCTAGCAGTGCTAGGAATTTTCTCATTGGCGGTTCGCGTTGTAATGCAGCAGATGGTAGTTCATGCTCTTGCACTGAGGATGAAACTTGTGTTTCTAGACGACAGCATATAAAAAATGAAGTTTTACCTGCACAAAAGCCATCCTCCTTAGTATCCAAAGCTACTATTGAAGTGGACGAAACATTGGTTTCAGCAAACTCAGTAAAGGGGCCAGCTTGCAGCAAGGTTGAGGGAGTTGATCAATCTGGCTGTACTCGGCAAATTGCGCCTGCTTCAAGTCCATCAAGTAAATCAGATTCTGTAACATATGCTTGTGGTATTGATGGTGTTCAAGAACGTGTTGAGCACTTATCTCCTCTTAATGCTGACCAGTTTTACAGGGCCGGTATTGCAGCTATAAATTTTCTTTCTGATATAGTTAATTATAACCTTCCTTTATCAAATGGAATGGAGATCCTAAGCTACTCTAAAAATTGTATGGTTGATACTGCCAGAACCCCACCCAAAATCAGATCTTCAAATGTGAAACAGATTAAACGGGAGAACTTTACCAGTGTTAATCCAAGACCATCTGTTTCTACTGATTCAGGTCCTAAGCATACCAGTCATAATAATAGCGCAAAGTGTAAAGGTGACAAGTCAAATTTGGGTAAAGGTTTTAAGCGTATTCCTTCTTCTGGTACAGAGAAGTCAGTGGTGTCTCAAAATATTCCATTAAATAATCATCATGAACACAGAGCCTTTCCACAGAGAACAAGAACAAAATCAAACCACATTGTGACAGATTTCGGTTCCAGCATGCATGTTTCAAACACACAGATGGTGGGATCGAACAAGGAAAGTTTCAATAAACATCCCAGGGATCTGAAAATGTCAGCTGGAACTACTTCGATGAACAGGCATTTTACAAACACACGGCGTACTGTGGAAGTGGTTTCAGATATACTAAAGCAGTTAAAGTGGGGTCCTGCAGCAGAAAAGGCTCTGTATAACCTGAATTTTTCAATGGATGCATATCAAGCTAACCAAATCTTGAAACAACTTAAAGACCACTCAGTTGCTCTTAACTTTTTTTACTGGTTAAAGCAACAACCAGGCTTCAGGCATGATGGGCATACTTACACCACCATGGTTGGTATCCTGGGCCGTGCTAGACGGTTTGATGCCATAAGCAAATTGCTAGAGCAGATGGTCAAGGATGGATGCCAACCAAATGTTGTAACGTACAATCGCCTTATTCATTGTTATGGTTGTGCAAACTACCTGAAAGAAGCACTGAATGTGTTCAATGAAATGCAGGAGGTGGGATGCGAGCCTGATCGTGTCACATACTGTACACTCATTGATATCCATGCTAAAGCTGGATTTATTGATGTTGCAATGTCTATGTACAAAAGAATGCAAGCAGCTGGTCTTTCTCCAGACACGTTTACTTATAGTGTTATAATCAACTGTCTTGGAAAAGCTGGCAATTTAGCTGCTGCCCACTGGCTCTTTTGTGAGATGGTTGATCATGGTTGTGTTCCTAATCTAGTCACCTACAATATCATGATTGCCTTGCAAGCTAAAGCAAGAAATTACGAGACGGCATTGAAACTATATCACGACATGCAGAATGCAGGATTTCAACCCGACAAAGTTACTTACAGCATAGTAATGGAGGCACTAGGCCATTGTGGTTATCTTGAGGAAGCTGAAGCAGTTTTTGTTGAGATGAAAAAGAGAAACTGGGTGCCGGATGAGCCTGTTTATGGTCTTTTAGTAGACTTGTGGGGAAAGGCTGGTAATGTTGAGAAGGCTTGGGAATGGTATCAGGCTATGCTGAATGCAGGTTTACTTCCAAATGTGCCTACTTGCAATTCCCTTCTCAGTGCATTACTCAGGTTGCATCGATTGCCTGATGCATATAATCTTGTCCAAAGCATGGTGGCTCTTGGCCTTAGACCTTCTTTGCAAACTTATACTGTGCTCCTTAGTTTCTGTACAGGGGCACAGTCAGCATATGATATGGGATTTTTCTGTGAGCTTATGGCGGTTACTGGCCATCCTGCTCATGCATTTTTACTGTCTATGCCAGCAGCAGGACCTGATGGTCAAAATGTGCAGGATCATGTCAGCAAATTCTTGGATATGATGCACACTGAGGATAGAGAGGGCAAAAGGGGGCTTGTAGACTCAGTGGTGAATTTTCTTCACAAGTCTGGGCTAAAGGAGGAAGCTGGTTCAGTTTGGGAGGCTGCTGCACAAAGGAATGTGTATCCAGATGCTGTCAAGGAGAAAAACTCTCGCTATTGGCTTATCAATCTTCATGTCATGTCCGATGGAACTGCTGTAACAGCATTATCTAGGACACTTGCTCAGATTCGCCGTCGGATGCTGGTATCCGGGATTCGCCCTAGTCGAATAGATATTATCACCGGATGGGGTCGTAGGAGCAAGGTGACAGGATCTTCCCTGGTGAGACAGGCAGTGCAGGAGCTGCTGCGTGCATTCAGTTTCCCATTTTTGGCTGGAAAGGGCAATTCAGGGTGTTTCGTGGGATGTGGGGAGCCTCTTTGTCAATGGTTGCTCCCCTCTTATGTGGAAAGGATGCATTTACTGTAG 2643 0.4317 MQTMLRAKQISALSSSARNFLIGGSRCNAADGSSCSCTEDETCVSRRQHIKNEVLPAQKPSSLVSKATIEVDETLVSANSVKGPACSKVEGVDQSGCTRQIAPASSPSSKSDSVTYACGIDGVQERVEHLSPLNADQFYRAGIAAINFLSDIVNYNLPLSNGMEILSYSKNCMVDTARTPPKIRSSNVKQIKRENFTSVNPRPSVSTDSGPKHTSHNNSAKCKGDKSNLGKGFKRIPSSGTEKSVVSQNIPLNNHHEHRAFPQRTRTKSNHIVTDFGSSMHVSNTQMVGSNKESFNKHPRDLKMSAGTTSMNRHFTNTRRTVEVVSDILKQLKWGPAAEKALYNLNFSMDAYQANQILKQLKDHSVALNFFYWLKQQPGFRHDGHTYTTMVGILGRARRFDAISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQAAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVDHGCVPNLVTYNIMIALQAKARNYETALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAEAVFVEMKKRNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLNAGLLPNVPTCNSLLSALLRLHRLPDAYNLVQSMVALGLRPSLQTYTVLLSFCTGAQSAYDMGFFCELMAVTGHPAHAFLLSMPAAGPDGQNVQDHVSKFLDMMHTEDREGKRGLVDSVVNFLHKSGLKEEAGSVWEAAAQRNVYPDAVKEKNSRYWLINLHVMSDGTAVTALSRTLAQIRRRMLVSGIRPSRIDIITGWGRRSKVTGSSLVRQAVQELLRAFSFPFLAGKGNSGCFVGCGEPLCQWLLPSYVERMHLL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01909 880 SUPERFAMILY TPR-like 417 658 IPR011990 GO:0005515
Cca11g01909 880 SMART SMR_2 777 869 IPR002625 -
Cca11g01909 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Cca11g01909 880 ProSiteProfiles Smr domain profile. 780 861 IPR002625 -
Cca11g01909 880 Pfam PPR repeat family 522 569 IPR002885 -
Cca11g01909 880 Pfam PPR repeat family 417 463 IPR002885 -
Cca11g01909 880 Pfam PPR repeat family 627 674 IPR002885 -
Cca11g01909 880 Gene3D Tetratricopeptide repeat domain 337 481 IPR011990 GO:0005515
Cca11g01909 880 Gene3D Tetratricopeptide repeat domain 482 553 IPR011990 GO:0005515
Cca11g01909 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Cca11g01909 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Cca11g01909 880 SUPERFAMILY SMR domain-like 778 858 IPR036063 -
Cca11g01909 880 Pfam PPR repeat 596 624 IPR002885 -
Cca11g01909 880 Pfam PPR repeat 386 415 IPR002885 -
Cca11g01909 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Cca11g01909 880 Pfam PPR repeat 484 516 IPR002885 -
Cca11g01909 880 MobiDBLite consensus disorder prediction 192 224 - -
Cca11g01909 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Cca11g01909 880 TIGRFAM PPR: pentatricopeptide repeat domain 385 419 IPR002885 -
Cca11g01909 880 TIGRFAM PPR: pentatricopeptide repeat domain 455 489 IPR002885 -
Cca11g01909 880 TIGRFAM PPR: pentatricopeptide repeat domain 560 594 IPR002885 -
Cca11g01909 880 TIGRFAM PPR: pentatricopeptide repeat domain 490 523 IPR002885 -
Cca11g01909 880 TIGRFAM PPR: pentatricopeptide repeat domain 420 453 IPR002885 -
Cca11g01909 880 TIGRFAM PPR: pentatricopeptide repeat domain 525 558 IPR002885 -
Cca11g01909 880 TIGRFAM PPR: pentatricopeptide repeat domain 596 629 IPR002885 -
Cca11g01909 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 628 662 IPR002885 -
Cca11g01909 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Cca11g01909 880 MobiDBLite consensus disorder prediction 240 254 - -
Cca11g01909 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Cca11g01909 880 Gene3D Tetratricopeptide repeat domain 565 683 IPR011990 GO:0005515
Cca11g01909 880 PANTHER BNAA07G31720D PROTEIN 4 880 - -
Cca11g01909 880 Gene3D - 756 859 IPR036063 -
Cca11g01909 880 PANTHER OS03G0856100 PROTEIN 4 880 - -
Cca11g01909 880 MobiDBLite consensus disorder prediction 192 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01909 Cca-Chr11 44373701 44377675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01909 473 753 Glycosyltransferase AT1G05670 23.843 1.60e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01909 - - gmx:100785113 1560.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01909 11 44373701 44377675 Cca11g01909 11 44373701 44377675 ECH