Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01902 ATGAAGATGAGTGAGATGTGGACAACAATGGGGTCAACCTTGGCCAGCTTCATGTTCTTGTGGACGATCATGAGACAATACTGTCCTTACGAGGTTCAACGTTTCTTCGAGAAGTACACACATAGGATCATGAGTTACTTCTACCCTTACATTAGAATCTCTTTCCATGAGTACATGGGGGACAGGCTTAAGCGCAGTGAGGCCTATGCAGCTGTGGAGGCATACCTCAGTACCAACACATCAAAGAGTGCTAAAAGGCTCAAAGCTGAGATGGGAAAGGATAGTAGCAACTTGGTGTTGACTATGGATGAGTATGAGAGAGTAACCGATGATTTCAAAGGTGTAAAAGTTTGGTGGGTCAGTAACAAAGTTATGTCACCAACAAGGTCCCCAATGTCTTACTATCCTGAACAAGAGAAAAGGTTCTACAAGCTCACTTTTCACAACAAGTATAGGGACATCATAACGGGGTCATATTTGGAGCATGTGATGAGGGAGGGAAAGGAGATTCGATTGAGGAATAGACAAAGGAAGTTGTACACTAATAGCCCTGGCTATAAGTGGCCAAGTTACAAGCAAACCATGTGGAGTCACATTGTGTTTGAGCACCCTGCAACTTTTGACACAATGGCCATGGAGCATGAGAAGAAAAGGGAGATCATAGAGGATTTGGTGACTTTCAGCAAGAGCAAGGATTTCTATGCAAGGATTGGTAAGGCATGGAAGAGGGGGTATCTTCTATATGGCCCTCCAGGGACAGGAAAATCAACCATGATTGCTGCAATGGCCAATTTGTTGGCCTATGATGTGTATGACTTGGAGCTCACAGCAGTGAAGGACAACACTGAGCTGAGGAAGCTTCTGATTGAGACCACTAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCTCTTGATCTCACAGGGCAGAGGAAAAAGAAGGGAGAAAAGTTGTCAGAAGATGAGAATGAGAAGGATGTTGTTGTTAGGAAAGAGGGCAAGGACGAAGGAGGGAGTGGTGGAAGCAAAGTCACACTCTCAGGGCTATTGAATTTCATTGATGGAATTTGGTCTGCTTGTGGTGGAGAGAGGTTGATTGTGTTCACAACAAACTATGTGGAGAAGCTTGATCCTGCTCTCATTAGGAGGGGGAGAATGGACAAGCATATTCAACTCTCTTATTGCACTTTTGATGGCTTTAAAGTGCTTGCTAATAACTACTTGAAGCTTGAAACTCATCCTTTGTTTGACACTATTGAGAGGCTAATTGGGGAGGTTAAGATCACACCAGCTGATGTTGCTGAAAATCTCATGCCTAAGTCTCCACTGGATGATGCTCACAAGTGTCTCTCAAACTTGATTGAAGCGCTTGAGGAAGCTGCAGAAGCCGAGGAGCTGAGGCAGAGTGGAACCATTGAGGAGGAACTTGTTCAGCAAAATGGGTCCCTTAAGGAAAATGGTGAGGTTCCAGGGGATAAAGTAGATCAAGGAATGAATCAGTGCCATCGATGGATCGTTAATGCTACATGA 1533 0.441 MKMSEMWTTMGSTLASFMFLWTIMRQYCPYEVQRFFEKYTHRIMSYFYPYIRISFHEYMGDRLKRSEAYAAVEAYLSTNTSKSAKRLKAEMGKDSSNLVLTMDEYERVTDDFKGVKVWWVSNKVMSPTRSPMSYYPEQEKRFYKLTFHNKYRDIITGSYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFDTMAMEHEKKREIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKGEKLSEDENEKDVVVRKEGKDEGGSGGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYLKLETHPLFDTIERLIGEVKITPADVAENLMPKSPLDDAHKCLSNLIEALEEAAEAEELRQSGTIEEELVQQNGSLKENGEVPGDKVDQGMNQCHRWIVNAT 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01902 510 CDD AAA 242 395 - -
Cca11g01902 510 ProSitePatterns AAA-protein family signature. 365 384 IPR003960 GO:0005524|GO:0016887
Cca11g01902 510 PANTHER BCS1 AAA-TYPE ATPASE 4 480 - -
Cca11g01902 510 Pfam Domain associated at C-terminal with AAA 29 121 IPR025753 -
Cca11g01902 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 443 IPR027417 -
Cca11g01902 510 SMART AAA_5 241 397 IPR003593 -
Cca11g01902 510 MobiDBLite consensus disorder prediction 315 339 - -
Cca11g01902 510 MobiDBLite consensus disorder prediction 315 341 - -
Cca11g01902 510 Pfam ATPase family associated with various cellular activities (AAA) 246 394 IPR003959 GO:0005524|GO:0016887
Cca11g01902 510 Gene3D - 391 455 - -
Cca11g01902 510 Gene3D - 201 390 IPR027417 -
Cca11g01902 510 Coils Coil 448 468 - -
Cca11g01902 510 PANTHER ATP BINDING PROTEIN 4 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01902 Cca-Chr11 44273251 44275126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01902 206 420 Miscellaneous Gene Families AT5G58870 28.700 5.80e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01902 - - gmx:100798176 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01902 11 44273251 44275126 Cca11g01902 11 44273251 44275126 ECH