Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01900 ATGGCGCACCGCTCCTCCCACCAACGTCGCAACTTGGACCCTCCACAACCCAATCCCACCAACGCAGATCCCATTCAGACCTACCAACCCTCTTTTTTGGTTAAACAATTGACCAGCCTCAACTTGAGTCACGCTCACAAAACCCGTCCACCCCGAAAACACTCTCCTCTTGTTGAAACCCGTGTGCAGGCCAAGGCCATGACGACCTCTGCTATAGTTACTGTGCCTGCCAAGAAAACCCACAAAGAGCATCCCAAAAGGGCGTGTTTGGAATTGGAAAGGAGGAAACTTGATGAACCTACTGAAAAGGGTGTGGTCGAGGTCGAGAAAACCAGGACTAGGAATCCTCATTTGGAGAAACATGATGACGATGTTGCTGAGAGAATGTCCGTGTCTGTGTCTATGTCTCTTGCTCCCGGTGGGGGTAGAAGGAGATCCTTCCGTGGGTCACAGGCTGATTTAAGAGATGTCTTTGCGATCAATGGTGCCAAAATGGTTTCGGTTGATATGCCACCGTTTATGCAGATCCATGCTGTGGACTGTGCCAGAAAAGCTTTAGATAGCATGGAGAAGTTCACATCCAAGACCCTTGCGCTCTCCCTCAAGAAGGAATTTGATGGGGTGTATGGGCCGGCATGGCACTGTATTGTGGGGACTAGTTTTGGCTCCTTTGTCACGCATTCCGTTGGAGGCTTTCTATATTTTTCCATGGATCAAAAATTATACATCCTTTTATTTAAGACCGCGGTGCAAAAAGCAGGTTCAACTTGA 771 0.4864 MAHRSSHQRRNLDPPQPNPTNADPIQTYQPSFLVKQLTSLNLSHAHKTRPPRKHSPLVETRVQAKAMTTSAIVTVPAKKTHKEHPKRACLELERRKLDEPTEKGVVEVEKTRTRNPHLEKHDDDVAERMSVSVSMSLAPGGGRRRSFRGSQADLRDVFAINGAKMVSVDMPPFMQIHAVDCARKALDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTAVQKAGST 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01900 256 PANTHER INTRASTRAND CROSS-LINK RECOGNITION PROTEIN-LIKE 33 253 - -
Cca11g01900 256 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 159 249 IPR037177 GO:0007017|GO:0030286
Cca11g01900 256 MobiDBLite consensus disorder prediction 1 26 - -
Cca11g01900 256 PANTHER DYNEIN LIGHT CHAIN 33 253 IPR001372 GO:0007017|GO:0030286
Cca11g01900 256 SMART Dynein_light_2 158 248 IPR001372 GO:0007017|GO:0030286
Cca11g01900 256 MobiDBLite consensus disorder prediction 11 26 - -
Cca11g01900 256 SUPERFAMILY DLC 161 248 IPR037177 GO:0007017|GO:0030286
Cca11g01900 256 Pfam Dynein light chain type 1 164 248 IPR001372 GO:0007017|GO:0030286
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01900 Cca-Chr11 44252621 44254157 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01900 - - gmx:100806149 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01900 11 44252621 44254157 Cca11g01900 11 44252621 44254157 ECH