Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01889 ATGGTTTCCGATTCAATCACCGCCGTGCCGATTCCCTCCGCCGCGAACACTAAGAACCCGGGGAAGAAGAAGAGGACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATTGATGCGCGCCGCGAGCAATGGCTATCTCAAGGTGCGGTGAAGAGCAAGGGGTCCAAGGACGGAGTGGATGATGACGGCCACGCGCCGCCGTCGCCGGCGGTGAAACACTTGCAGCCACTGGTCACCAGGCGCCGAGGCGAAGTGGACGATGGATTGATCCATCACGACAGCGATTCGGAATCTCCGACGAACTGTCCCGCTGGCGTGCTTTGCGGAAACGATTCGGGGacgaatttcaccggcagcagcagtggcggcagcagcagcagcagcagtagctctagtagcggtgggtgctgctccgggaacgtcacggaGgaggaagaagaagaaggtgatgttaatgttgatgatgatgatgatggatgcttggatgatTGGGAGGCTATGGCGGATGCCTTAGCCGCCGATGACAAGCGTGAAAACCCTTGTTCGGATTCGCCCCCAGTGGTTGTGCCCTGTGAGGGGTCCACTTTGGGGTCTCCGAATTCAAAACCCGAGAGTGGTAGATTGGTTCCTTGGGGCTCTGGAAATAGCAGAGCGTGGAGGGCCGATGATGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCGAACCCTGATCGGCGTTGCGTAGGAGGGGTCCCTTGGGGTCGCACCTCCACGCCATCCTCGTGTCCGATTTGCTGTGAGGATCTCGATTTGACGGACACGAGTTTCATGCCCTGCCTGTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATTCTCGAGGAGGATGGCCGTTGTCCTGGGTGTAGGAAGCCCTATGAGTGTGAGCCTGTTGAGACGGAGGCCAGTGTGCTTGGAGGCAGCCTCACTCTTCGGTTGGCACGCTCCTGCAGCATGATCGAGAGGTCTTGA 1011 0.4955 MVSDSITAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKSKGSKDGVDDDGHAPPSPAVKHLQPLVTRRRGEVDDGLIHHDSDSESPTNCPAGVLCGNDSGTNFTGSSSGGSSSSSSSSSSGGCCSGNVTEEEEEEGDVNVDDDDDGCLDDWEAMADALAADDKRENPCSDSPPVVVPCEGSTLGSPNSKPESGRLVPWGSGNSRAWRADDAFRPQSLPNLSKQHSMPNPDRRCVGGVPWGRTSTPSSCPICCEDLDLTDTSFMPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVLGGSLTLRLARSCSMIERS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01889 336 MobiDBLite consensus disorder prediction 141 161 - -
Cca11g01889 336 SUPERFAMILY RING/U-box 257 311 - -
Cca11g01889 336 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 334 - -
Cca11g01889 336 Pfam RING/Ubox like zinc-binding domain 261 307 - -
Cca11g01889 336 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 16 334 IPR039780 GO:0004842|GO:0030014
Cca11g01889 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 317 IPR013083 -
Cca11g01889 336 ProSiteProfiles Zinc finger RING-type profile. 261 303 IPR001841 -
Cca11g01889 336 MobiDBLite consensus disorder prediction 1 161 - -
Cca11g01889 336 MobiDBLite consensus disorder prediction 95 139 - -
Cca11g01889 336 CDD mRING-HC-C4C4_CNOT4 261 304 IPR039515 -
Cca11g01889 336 MobiDBLite consensus disorder prediction 77 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01889 Cca-Chr11 44095914 44097111 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01889 - - gmx:100796324 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01889 11 44095914 44097111 Cca11g01889 11 44095914 44097111 ECH