Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01879 ATGCTTATCGGTAGCAACTTGCATTTTTCTCGGTGGACTTTCTTCAAACACCTTACGACACGGAAATTCACACCACCACTCTGTCAGCACAAATCCCTCGCCACTCTCTCCCACTTCGGAACGCTAAATTCCCGCCAGAAGGACCAGGTTCATCTCTACGTCCACACTCTTCTTCAATGGAACAAGCGCATGAATCTCACCGCAGTTAGAGATGTGAACGAAGCCATGGAAAGGCACGTGGAGGACTCCCTCTCCATTTTGCCTCCGTTGAGCGATTGTTACCGCTCGCACTGCGGCGCTTCGTGCGATAAGCTGAGCCTCGTCGATGTCGGAACTGGCGCTGGCCTTCCCGGAGTAGTTTTGGCCATAGCTCGCCCAGAGTGGGATGTAACGCTGCTGGAGTCTATGAACAAGCGCTGCGTCTTTTTGGAGCACGTTGTCAGTGTTATCGGATCCTCGAACATTCAAATTGTAAAAGGAAGAGCTGAGAGTTTGGGGCAGAATCCTTGCTTCAGAGAGCAATTTGACGTAGCAGTGGCCAGGGCAGTTGCAGAAATGAGAATATTAGCTGAATATTGTCTTCCTTTGGTTCGTGTTGGTGGATTGTTTATTGCTGCCAAGGGTCATGATCCTCAGGATGAAATTAAGAAAGCAGAAAGGGCCATCCAGAAGGTGGGAGCATCTCTATTGCAAGTTTGCTCAGTGGAATCGCAAAGCCCATATGGTCAACGAACTGCTGTCATATGTTTAAAGGATCGTCCTACCCCGATGAAATATCCCCGTGATCCAGGATGCAAATGGTTTGCGCACATCCATTGTGAAGGCTTTTATACAAACGTTCAGTTTAGAAATGACGAATGTTTTGTTTGTAGCATTCCTACCTGGCTACCTCCTAATTTTTGTCTGATGTTTCCGCACGACGCAAGAGTGAATATTCAAAATCAACTGATAGGTTGGAAATCTTAG 966 0.4752 MLIGSNLHFSRWTFFKHLTTRKFTPPLCQHKSLATLSHFGTLNSRQKDQVHLYVHTLLQWNKRMNLTAVRDVNEAMERHVEDSLSILPPLSDCYRSHCGASCDKLSLVDVGTGAGLPGVVLAIARPEWDVTLLESMNKRCVFLEHVVSVIGSSNIQIVKGRAESLGQNPCFREQFDVAVARAVAEMRILAEYCLPLVRVGGLFIAAKGHDPQDEIKKAERAIQKVGASLLQVCSVESQSPYGQRTAVICLKDRPTPMKYPRDPGCKWFAHIHCEGFYTNVQFRNDECFVCSIPTWLPPNFCLMFPHDARVNIQNQLIGWKS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01879 321 CDD AdoMet_MTases 107 204 - -
Cca11g01879 321 Hamap Ribosomal RNA small subunit methyltransferase G [rsmG]. 39 248 IPR003682 GO:0005737|GO:0006364|GO:0008649
Cca11g01879 321 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 38 264 IPR029063 -
Cca11g01879 321 Gene3D Vaccinia Virus protein VP39 27 268 IPR029063 -
Cca11g01879 321 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 2 265 IPR003682 GO:0005737|GO:0006364|GO:0008649
Cca11g01879 321 Pfam rRNA small subunit methyltransferase G 47 236 IPR003682 GO:0005737|GO:0006364|GO:0008649
Cca11g01879 321 TIGRFAM rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 52 243 IPR003682 GO:0005737|GO:0006364|GO:0008649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01879 K03501 - gmx:100818428 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01879 11 44012214 44017283 Cca11g01879 11 44012214 44017283 ECH