Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01876 ATGGAAAAGAAGCGGAAGAGGAAGCAGCATGTGGCGCGTGAGACGAAGGCAAAGGCGAAGGCGGTTCGTGTGGGCCCAACCCGAAGCGACAATGTGAAGGATCCATTCCCATCTCACACTCGACCCACCCCACAAGAATGCGAAACCCTACGCGACACTCTCTTAGCCCTTCACGGCATTCCCCCGGACCTCGCCAAGTACCGCAAACTCCAACCAACCAGCGACACGGCCCAACCCGACCCGCCCGAGCCCGTTCTCGACGGTTTGGTCCGAACCGTCCTCTCTCAGAACACCACCGAAGCCAATTCCCAAAAGGCTTTCGCCACCCTCAAATCCTCCTTCCCCACTTGGGGACATGTTCTCGGTGCTGACTCCAAGGACGTGGAGGATGCTATTCGATGTGGGGGTTTAGCCCCGACTAAGGCTTCTTGTATTAAGAACTTGTTGCGTTGTTTGCGCGAGAGAAGAGGCGAGTTGTGTTTGGAGTATCTGCGTGACTTGTCCGTTGATCAAGTTAAGGCTGAGCTCTCTCTTTTCAAAGGAATTGGTCCCAAAACGGTGGCTTGTGTGTTGATGTTCAATCTTCAGCAAGATGATTTTCCTGTGGACACTCACATATTTGAGATTGCAAAAACCATTGGTTGGGTACCAGCTATTGCAGACAGAAACAAGTCGTATCTTCATCTAAACCAAAGGATACCAAATGAACTGAAGTTTGACTTGAATTGCCTTCTGTATACGCATGGGAAGCTTTGCCGCAAATGCTCCGGTAAAAAGGGTAACAATCAAGGAAAGAAATGTAACGATAACCCCTGTCCTTTATTGAATCATGATAAAGAGTCGGTTGAACTTTGA 855 0.4982 MEKKRKRKQHVARETKAKAKAVRVGPTRSDNVKDPFPSHTRPTPQECETLRDTLLALHGIPPDLAKYRKLQPTSDTAQPDPPEPVLDGLVRTVLSQNTTEANSQKAFATLKSSFPTWGHVLGADSKDVEDAIRCGGLAPTKASCIKNLLRCLRERRGELCLEYLRDLSVDQVKAELSLFKGIGPKTVACVLMFNLQQDDFPVDTHIFEIAKTIGWVPAIADRNKSYLHLNQRIPNELKFDLNCLLYTHGKLCRKCSGKKGNNQGKKCNDNPCPLLNHDKESVEL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01876 284 Coils Coil 277 284 - -
Cca11g01876 284 Gene3D Hypothetical protein; domain 2 81 201 - -
Cca11g01876 284 CDD ENDO3c 89 249 IPR003265 GO:0006284
Cca11g01876 284 Pfam HhH-GPD superfamily base excision DNA repair protein 90 231 IPR003265 GO:0006284
Cca11g01876 284 Gene3D - 69 252 IPR023170 -
Cca11g01876 284 PANTHER - 3 279 - -
Cca11g01876 284 SMART endo3end 94 251 IPR003265 GO:0006284
Cca11g01876 284 SUPERFAMILY DNA-glycosylase 48 257 IPR011257 GO:0003824|GO:0006281
Cca11g01876 284 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01876 K10773 - gmx:100802952 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01876 11 43984244 43986582 Cca11g01876 11 43984244 43986582 ECH