Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01875 ATGTTTCGTCCTCGCTATTACTTGACATGCTTTCTTCTCTTCCTCCTCGTACTTTCCGTCCTCTCCATCTCCCAATCGCAATCCCCCTCCGCTGCCAAGAAAAAGCGCATGAGAGACAAAGTTCGCAATATGTTTTACCACGCATATGACAACTATATGATGTATGCATTTCCGCATGACGAGCTAAAACCCCTCACTAAAACTTTCACCAACTCCTTAAGTGAGTTGGGAAATTTGAAGCTTGAACACTTGCCTCAAGACTACAACGGTTCTGCACTTACGCTTATTGAATCGCTGTCTAGCCTTGTTATTATGGGCAATAACACTGAATTTGAGAGGGCGGTGCTGTGGCTTTCGGAAAATCTAACATTTGATGTTGATGCACGCATAAATCTTTTTGAGTGCAACATAAGAGTTCTTGGAGGACTTGTCTCTGCTCACTTACTTGCATCTGATTCTTCAAAGAAATTGTTTCAAGGAGCTTACGAGAATCAGCTGCTACTTCTGGCTGAAGATTTAGGGAAACGCTTTCTACCTGCATTCAATACGCCTACTGGATTGCCATATGCATGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTGATTCTTGAAATGGGTGCTTTATCAAAAATGACTGGTGACCCCATATATGAATCAGTAGCTTTACGAGCTCTTCGCAAGCTATGGAGTATGCAGAGCTCATTAAAACTATTTGGAACCACACTGGATGTGGCAACTGGACAATGGATTGAATATTCGTCAGGAATTGGAGCTGGGGTTGATTCCTTCTATGAGTATCTACTTAAAGCGCATATCCTTTTTGGGAAGGAGGACTTTTGGAAAATGTTTCATTCTGCTTATGTTGCGGTGCAGAAATATTTCAGACATGGTCCCTGGTACCATGAAGCTGATATGAGAACAGGAAGAGCAACTTATTGGCAGCTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTGTTGGGGATGTTATCGCTGCTAATTCATCTCACCGTGAGTTCTTCCATGTGTGGAAGAGATTTGGTGTGCTACCAGAGAGGTATTTGCTGGACCACCAGATGCTTCACCCTACTGAAAAATATTACCCATTACGTCCTGAATTGGCTGAGTCAACATTCTACTTATATCAAGCTACTAAAGATCCATGGTATATTGAAGTCGGTGAATCAATAGTCAATTCCCTTAATTTATACACCAAAGTTGAAGGAGGGTTTGCAAGTGTTAAGGATGTGACAACGATGCAATTGGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGCAAATATTTATATCTTCTATTTGACGATTCATTTGTACATGAGAACAATTACGTATTTACCACTGAAGGTCATCCCCTTCCGGTACTAAGCACTTGGCATGAAGAGCTTCCTGTAGCTTATATTCCAACTAATTGGACTTTCGTGAAGAGGCGATCAACAGTGAATCGAATCAGTGCAATGTCTTTGCAAGTATGTCCTGCTATGAATTTAAAGTCAGGTCAACATATTGAGAGTGCTTGCCACATCCCCGATGCCCGTGGTGATTACAGGTTTTACCACGCATATGACAACTATATGATGTATGCATTTCCGCATGACGAGCTAAAACCCCTCACTAAAACTTTCACCAACTCCTTAAGTGAGTTGGGAAATTTGAAGCTTGAACACTTGCCTCAAGACTACAACGGTTCTGCACTTACGCTTATTGAATCGCTGTCTAGCCTTGTTATTATGGGCAATAACACTGAATTTGAGAGGGCGGTGCTGTGGCTTTCGGAAAATCTAACATTTGATGTTGATGCACGCATAAATCTTTTTGAGTGCAACATAAGAGTTCTTGGAGGACTTGTCTCTGCTCACTTACTTGCATCTGATTCTTCAAAGAAATTGTTTCAAGGAGCTTACGAGAATCAGCTGCTACTTCTGGCTGAAGATTTAGGGAAACGCTTTCTACCTGCATTCAATACGCCTACTGGATTGCCATATGCATGGATTAACTTAAAGTCAACAGTTATTGGGATGCGTCATTTTGTTCTGTCGTCTCTCCAGCTATCAGAAGATAGGCTTACAAAAAGCCACACATTGGGCCATTTTGTATTTGCATGCACTGTTCCTGCTTCAATGGCATTACGCAAGCTTTTCGTGATGGGGGTATTGCTGCTGGTTTGCCTAGCTAAGGTTTCATCTGATGTTGACATAGAAAAGGAAGAACATGAGGAACTTCACTATCCTGATGACCCGCTTATTGTGAGAGACGGGAACAGAAGGCTAATGCAAGACATAGATTGTGGAGAATTGTGCAAGTCAAGGTGCAGTGCGCATTCTCGACCAAACGTGTGCCATAGGGCTTGTGGCACGTGCTGTGTGAGATGCAAGTGTGTCCCACCTGGTACCTCAGGCAACAGGGAACTCTGTGGGGCTTGCTATACGGATATGACGACCCATGGCAACAGGACTAAGTGCCCTTAG 2538 0.4267 MFRPRYYLTCFLLFLLVLSVLSISQSQSPSAAKKKRMRDKVRNMFYHAYDNYMMYAFPHDELKPLTKTFTNSLSELGNLKLEHLPQDYNGSALTLIESLSSLVIMGNNTEFERAVLWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKKLFQGAYENQLLLLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKMTGDPIYESVALRALRKLWSMQSSLKLFGTTLDVATGQWIEYSSGIGAGVDSFYEYLLKAHILFGKEDFWKMFHSAYVAVQKYFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLVGDVIAANSSHREFFHVWKRFGVLPERYLLDHQMLHPTEKYYPLRPELAESTFYLYQATKDPWYIEVGESIVNSLNLYTKVEGGFASVKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFVHENNYVFTTEGHPLPVLSTWHEELPVAYIPTNWTFVKRRSTVNRISAMSLQVCPAMNLKSGQHIESACHIPDARGDYRFYHAYDNYMMYAFPHDELKPLTKTFTNSLSELGNLKLEHLPQDYNGSALTLIESLSSLVIMGNNTEFERAVLWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKKLFQGAYENQLLLLAEDLGKRFLPAFNTPTGLPYAWINLKSTVIGMRHFVLSSLQLSEDRLTKSHTLGHFVFACTVPASMALRKLFVMGVLLLVCLAKVSSDVDIEKEEHEELHYPDDPLIVRDGNRRLMQDIDCGELCKSRCSAHSRPNVCHRACGTCCVRCKCVPPGTSGNRELCGACYTDMTTHGNRTKCP 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01875 845 Pfam Glycosyl hydrolase family 47 44 477 IPR001382 GO:0004571|GO:0005509|GO:0016020
Cca11g01875 845 Pfam Glycosyl hydrolase family 47 541 693 IPR001382 GO:0004571|GO:0005509|GO:0016020
Cca11g01875 845 PANTHER ALPHA-MANNOSIDASE I MNS5 541 695 - -
Cca11g01875 845 PANTHER ALPHA-MANNOSIDASE I MNS5 17 540 - -
Cca11g01875 845 Gene3D - 26 487 IPR012341 GO:0005975
Cca11g01875 845 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 541 695 IPR044674 GO:0004571|GO:1904380|GO:1904382
Cca11g01875 845 Gene3D - 538 719 IPR012341 GO:0005975
Cca11g01875 845 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 17 540 IPR044674 GO:0004571|GO:1904380|GO:1904382
Cca11g01875 845 SUPERFAMILY Seven-hairpin glycosidases 35 484 IPR036026 GO:0004571|GO:0005509|GO:0016020
Cca11g01875 845 Pfam Gibberellin regulated protein 785 845 IPR003854 -
Cca11g01875 845 PRINTS Glycosyl hydrolase family 47 signature 129 147 IPR001382 GO:0004571|GO:0005509|GO:0016020
Cca11g01875 845 PRINTS Glycosyl hydrolase family 47 signature 44 64 IPR001382 GO:0004571|GO:0005509|GO:0016020
Cca11g01875 845 PRINTS Glycosyl hydrolase family 47 signature 443 463 IPR001382 GO:0004571|GO:0005509|GO:0016020
Cca11g01875 845 PRINTS Glycosyl hydrolase family 47 signature 270 287 IPR001382 GO:0004571|GO:0005509|GO:0016020
Cca11g01875 845 PRINTS Glycosyl hydrolase family 47 signature 179 198 IPR001382 GO:0004571|GO:0005509|GO:0016020
Cca11g01875 845 PRINTS Glycosyl hydrolase family 47 signature 384 408 IPR001382 GO:0004571|GO:0005509|GO:0016020
Cca11g01875 845 PRINTS Glycosyl hydrolase family 47 signature 327 343 IPR001382 GO:0004571|GO:0005509|GO:0016020
Cca11g01875 845 SUPERFAMILY Seven-hairpin glycosidases 541 700 IPR036026 GO:0004571|GO:0005509|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01875 Cca-Chr11 43958022 43977205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01875 522 695 Glycoside Hydrolase AT1G27520 76.437 1.96e-83 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01875 K10084 - gmx:100793674 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01875 11 43958022 43977205 Cca11g01875 11 43958022 43977205 ECH