Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01874 ATGAAACAGACCTGTGGGAAGGAGTTACATACTACAGAGTTAAGAAATTTGCAGCTGCAGTTTGAAAACAGCATTTCTCTTCCTGTCTTTACAGGAGCTCGGATTGAAGGGGAGGATGGCTCCAACTTAAGGATAAGCTTAGTTGATGCCCTAACAGGGAAGGTTGTTAGTACAGGACCTGAATCATTGGCCAAGGTGGAAATTGTAGTCCTTGAGGGTGATTTTGAAGAAGAAAGTGACATTTGGATGCCGGAAGAGTTCAAGAGCAATATTGTGAGAGAGAGGGAAGGAAAAAAGCCTCTTCTTACGGGAGATGTAATTTTATATCTTAAAGATGGGATTGGTATGGTGGGGGAAATTTCATATACGGATAATTCAAGCTGGACAAGGAGCCGCAGGTTCAGGCTAGGGGCAAGAGTTGTGGACAACTTTGATGGTGTTAGAATAAGAGAAGCAAAGACAGAATCATTTATCGTAAGGGATCACAGAGGAGAATTGTACAAGAAGCACCATCCTCCTAGCCTGTCTGATGAAGTTTGGAGGTTGGAAAAGATTGGCAAGGATGGAGCTTTCCACAAGCGTTTGAGTCGTGAAAAGATCCTCACTGTTAAAGATTTTCTCACACTTCTCAACCTGGATCCAGCAAAACTGCGCAGTATACTGGGCACTGGCATGTCTGCAAAGATGTGGGAGGTAACTGTGGAACATGCTCGAACTTGTGTACTCGATACAACAAGGTACCTGTACTTCCCTTCTCATTCTCAACAACCTGGTGTGGTCTTCAATGCCGTGGGGCAAGTGACAGGACTGCTTTATGAATGCGAGTATGTCACAGTAGATAAGCTGACTGAAACCGAAAAGGCTGATGCTCAAAACACGGTTACTACTGCATTAAGACAAGGGGAGAAATATGCCACTTTCGAAGATGAAGACTCTCTCATGGATGGCTCTTCACACTTGACTAATGTACTTTACTCCCCAAGCTCTCCCAAGACAGAGGGATCAAGTGCCAACAAGCTTTTGGCTTCCCAAAAGACTGGAGGATTCAATTATCCACAGGCAAATGCCTCTTCTCCAGATATCATGTCATCCATTTATTCTGTTGGTGGAACTAGTAGCTTGGATGACTATTGCTTGCCTAATTTTGACAGCATGGGCCTTAGATACGATCAAACCCTTAGTTTTCCAGTCCAAGTCTCCAACTCTTTGATCTGTGACACTGATTCAATGGCTCATGCTTTTAGTGATGATCATCTGCAATTTTTTGAGAGTGATCTTCAATCTCAGTGTCACGTTCAAGCGGATTTACAGAGTGCTGTTGATAGCTTCATGCTCGCACGTTCTGCATCGCTGGCCAGTGGAGCACAGAGGAGATGGAGGAAGCTATTCAACGTCCTAAAATGGTTCATGGTTAGGAAACGAGGAAACCAAAAACAGTTAATGTTGTGA 1449 0.4389 MKQTCGKELHTTELRNLQLQFENSISLPVFTGARIEGEDGSNLRISLVDALTGKVVSTGPESLAKVEIVVLEGDFEEESDIWMPEEFKSNIVREREGKKPLLTGDVILYLKDGIGMVGEISYTDNSSWTRSRRFRLGARVVDNFDGVRIREAKTESFIVRDHRGELYKKHHPPSLSDEVWRLEKIGKDGAFHKRLSREKILTVKDFLTLLNLDPAKLRSILGTGMSAKMWEVTVEHARTCVLDTTRYLYFPSHSQQPGVVFNAVGQVTGLLYECEYVTVDKLTETEKADAQNTVTTALRQGEKYATFEDEDSLMDGSSHLTNVLYSPSSPKTEGSSANKLLASQKTGGFNYPQANASSPDIMSSIYSVGGTSSLDDYCLPNFDSMGLRYDQTLSFPVQVSNSLICDTDSMAHAFSDDHLQFFESDLQSQCHVQADLQSAVDSFMLARSASLASGAQRRWRKLFNVLKWFMVRKRGNQKQLML 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01874 482 PANTHER CALMODULIN-BINDING PROTEIN 60 A 1 477 - -
Cca11g01874 482 Pfam Calmodulin binding protein C-terminal domain 246 304 IPR046829 -
Cca11g01874 482 Pfam Calmodulin binding protein central domain 174 240 IPR046830 -
Cca11g01874 482 PANTHER OS02G0177800 PROTEIN 1 477 IPR012416 GO:0005516
Cca11g01874 482 Pfam Calmodulin binding protein-like N-terminal domain 17 162 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01874 Cca-Chr11 43924516 43928928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01874 1 288 Calmodulin-binding Proteins AT5G62570 62.630 6.28e-131 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01874 - - ccaj:109807600 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01874 11 43924516 43928928 Cca11g01874 11 43924516 43928928 ECH