Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01869 ATGGAGGTGGACCCCACGTGGGAGGCGAGGGCGTTGCCGGCGATGGACTCGGTGGTGAAAGTGTTCTGCGTTCACACGGAGCCGAATTTCTCGCTTCCGTGGCAGAGGAAGAGGCAATACAGCTCGAGTAGCAGCGGGTTTGTGATCGGTGGCAGAAGGGTTCTGACGAATGCGCATTCCGTGGAACATTACACACAGGTTAAGCTTAAGAAACGTGGCTCTGATACCAAGTACTTGGCCACCGTGCTTGCCATTGGAACCGAATGTGACATTGCCATGCTTACAGTTGATGATGATGAATTCTGGCAAGGGATGTCACCTGTAGAGTTTGGGGATTTGCCCACACTTCAAGATGCAGTTACTGTTGTTGGCTACCCAATTGGTGGAGACACTATCTCTGTGACCAGTGGTGTTGTATCGCGCATTGAGATTCTATCTTATGTCCATGGATCTACAGAACTTTTAGGTTTACAGATAGATGCTGCTATAAATTCTGGCAATTCTGGGGGGCCTGCATTTAATGAAAAAGGAAACTGTGTGGGGATTGCTTTTCAGTCCCTCAAGCATGAAGATGTGGAGAATATAGGTTATGTCATTCCAACACCAGTTATCATGCATTTCATCCAGGATTATGAGAAGAATGGAGGATATACTGGATTCCCTATACTCGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTAAGAACGGCAACGGGCATGAGACCTGATCAGAAAGGTGTGCGCATTAGAAGAATTGATCCTACTGCTCCAGAATCTAAAGTTTTGAAGCCATCAGATGTGATCCTTAGTTTTGATGGGGTTGATATTGCCAATGATGGAACAGTTCCATTTCGTCATGGAGAGCGCATTGGTTTCAGTTATCTCATATCCCAGAAATATACTGGTGATAATGCAGCAATCAAAGTACTGCGCAATTCAGATATTTTGAAATTTGACATTAAACTCAATAGTCACAGAAGGCTTATTCCAGCACACAGCAAGGGCAAGCCTCCCTCATATTATATAATTGCAGGATTTGTTTTTACAGCCGTTTCAGTTCCATATCTTCGTTCTGAGTATGGAAAGGATTATGAATATGAAGCTCCAGTCAAGCTTTTAGATAAACTGCTGCATTCGATGCCACAATCACCCGATGAACAACTTGTTGTGGTATCCCAGGTGCTGGTGGCTGATATCAATATTGGATATGAAGATATTGTTAATACCCAGGTCGTTGCTTTCAATGGTAAACCTGTGAAAAACCTGAAGAGCTTGGCCGCTATGGTAGAGAGCTGCAATGATGAATATCTAAAATTTGATCTGGATTATGATCAGATAGTGGTCCTTCGCGCAAAGACAGCAAAAGCAGCTACTCTAGATATTCTTGCAACACACTGTATTCCATCCGCAATGTCTGATGATCTTAAGTCATGA 1437 0.4391 MEVDPTWEARALPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGDLPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNEKGNCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGGYTGFPILGVEWQKMENPDLRTATGMRPDQKGVRIRRIDPTAPESKVLKPSDVILSFDGVDIANDGTVPFRHGERIGFSYLISQKYTGDNAAIKVLRNSDILKFDIKLNSHRRLIPAHSKGKPPSYYIIAGFVFTAVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDIVNTQVVAFNGKPVKNLKSLAAMVESCNDEYLKFDLDYDQIVVLRAKTAKAATLDILATHCIPSAMSDDLKS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01869 478 Gene3D - 216 328 IPR036034 GO:0005515
Cca11g01869 478 Pfam PDZ domain 330 475 IPR041517 -
Cca11g01869 478 Pfam PDZ domain 222 323 IPR001478 GO:0005515
Cca11g01869 478 PRINTS HtrA/DegQ protease family signature 46 58 IPR001940 GO:0004252|GO:0006508
Cca11g01869 478 PRINTS HtrA/DegQ protease family signature 74 94 IPR001940 GO:0004252|GO:0006508
Cca11g01869 478 PRINTS HtrA/DegQ protease family signature 116 140 IPR001940 GO:0004252|GO:0006508
Cca11g01869 478 PRINTS HtrA/DegQ protease family signature 153 170 IPR001940 GO:0004252|GO:0006508
Cca11g01869 478 PRINTS HtrA/DegQ protease family signature 262 274 IPR001940 GO:0004252|GO:0006508
Cca11g01869 478 SUPERFAMILY PDZ domain-like 246 328 IPR036034 GO:0005515
Cca11g01869 478 Pfam Trypsin-like peptidase domain 45 182 - -
Cca11g01869 478 Gene3D - 2 101 IPR043504 -
Cca11g01869 478 PANTHER PROTEASE DO-LIKE 9 9 477 - -
Cca11g01869 478 Gene3D - 102 213 IPR043504 -
Cca11g01869 478 Gene3D - 329 478 IPR046449 -
Cca11g01869 478 PANTHER - 9 477 - -
Cca11g01869 478 SUPERFAMILY Trypsin-like serine proteases 13 215 IPR009003 -
Cca11g01869 478 CDD PDZ_serine_protease 221 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01869 Cca-Chr11 43837568 43842681 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01869 K25897 - gmx:100791040 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01869 11 43837568 43842681 Cca11g01869 11 43837568 43842681 ECH