Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01863 ATGGGAACGACAACGACACCCCCTCAGTCTGACACTGTTCGCGTCTTCAACATACCTCAATCCGCCACCGCCAAGGACCTCCTCGACTTCCTCGAAGCGGCGGTGGGCCCCTCCACCGTCTTCGCCCTCGAAATCTTCTCCGACAACCCCAACTGGAAGTCCCGCGGCACCGGGCGAGTGCAGTTCGAGAGCGCCGAGGCCAAGTCCCGCGCCCTCTCTCTCTCCAACCTCCACCAACTCCTCTTCCTCTCCCACTTCCTCCGCCTCTCCGAGGCCTCCGACGACATCATCTTCCGCCCCCGCCACCACCTCCGCAACGGCGTCCTCTACACCGGCTTCATGCTCCACGACCACCGCATGAGCGTCCTCGACTCCTGGGAGGGCGTCACCGGCTGCGTCATGCCCCAAAGGAGGAAGCTTGAATTCTGGGTCTTCCATAATGCCGACTGTTACAGACTCGAGATTTTCTTTGAGGACATTTTGGAGTCTCATGGCTATTGCTTGGGAGAAGATGCCAAACTCAATGCCATACTCTTGAAGCTAAAATATGGGCCAAAGATTTATCAGAAAAAGACGGGGCCAGATGTGGCAGCCAAGTTTAAGGGGGATAGGTACCGTTTTTGTAAGGAGAATTTTGAGTTTGTTTGGGTGCGGACTACTGACTTCTCGGAGCTGAAGTCAATTGGGCACTCTACTTCATTTTGTTGGGAAATTGAGGAGGAACATTTAGCTTCGGATGTTTTTGCAAGTTTCCCCCTCTACAAGGAAAATTTGAGAGATTTGGCTCTGGAAGATGGGGAAGAATTTTGCTCTCCGACAGAAGCAGTTCCGCTTGTGAAGTGTGCTTCGGAATCCAAATTACCTTATGAGGCTCTTTTCCAACTGAATTCTCTTGTTCATACTCAGAAAATTTGTCTTGCTTCGGTGGATGATGAGTTGATTGACTTGTTAGGAGGCTTAGATGAAGAAAGTAGAGCTGTGATTTTTCAGAAATTGCACAAGATGAGCTCCACTTGTTATGAGCCTCTCAAATTCGTGAAGACTCAATTACATGTGCTGAGTACTAAGAGTAGAAAACTGCCACAATCGACGCAGAAAAGATTGACAGATAATAACATTATGAGCTGTCATAGAGCCTTGATTACCCCAACAAAGATTTTTTGCCTCGGTCCTGAGCTTGAAACCTCAAATCATGTGGTAAAGCACTTCGCATCATATGCTTCAGACTTTATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAACTAATGCAGTATCAACTGATATTCAAAAGGGAATCTTTTCAAAGCCTTTTAAAACTGAAATATATAAGCGCATATTGACTATTCTCCGAGATGGGATTGTAATTGGAACGAAAAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATGTGAAAGCGGCAGATATCAGGGAATGGATGGGAAGCTTCAACAATATCCGCAGTGTTTCTAAATGTGCAGCAAGGATGGGTCAGTTGTTCAGTTCTTCTATGCAAACTTTTGAAGTTCCCCCTCAAGATGTGGAGATAATTCCAGATATTGAAATTACCTCTGAGGGTGTAAGCTACTGTTTCTCAGATGGTATTGGAAAAATTTCCCAATCTTTTGCTAGGCAAGTTGCCCAAAAGCTAAAATTGGATCATAGTCCATCAGCATTTCAAATTCGGTTTGGTGGATATAAAGGTGTAATTGCTGTTGATCGCCATTCCTATAGGAAGTTATCATTGCGAAGCAGTATGCTTAAGTTTGAATCCAAAAACAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGATGTCTACCTTAGGAGTAAAAGATGAGGCATTTTTGGCAATGCAGCAGGAACAATTGCATTTGTTAGGTAGGATGTTGACTGATAGTAAGGCGGCTTTGGATGTTTTGGAAAGTTTAAATGCAGCTGATTCAAAGAGCATTCTGGTGAAAATGTTGCATGAATTTAACGAGCCAAACAAGGAGCCTTATCTATCGATGATGCTTAAGGCTTATTATGCATCCCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGAGTCTTAGTTGGTTGTTTGGATGAAACTGGTATTTTGGATTATGGCCAAGTATTTGTCCGCATAACTGTGACAAAAGCTAGGGAAAAATTTGGAGATGAAAGCTTAAGGAAAGTGGATGGCGATGATAGCACACGAATAATAGTGGGGAAGGTGGTGGTCACAAAAAATCCTTGTCTTCACCCAGGTGACATCAGAGTCCTTGATGCTATCTACAACGAAGAATTAGAGGAAAAGGGTTGGAGGGATTGCCTTGTATTTCCTCAAAAAGGACATAGGCCTCATCCAAATGAATGCTCTGGTGGTGATCTTGATGGAGATTTGTTTTTCATAAGCTGGGACAAAGATCTAATCCCATGTCAAACTGAGGCTCCAATGGACTACACAGGAAGCAGGCCTCGTATAATGGACCATAAGGTGACCCTAGAGGAAATTCAACAATTTTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCCACCGCACATCTAGTTCATGCCGACCGTGAACCAGAAAAGGCCAAGAGTAGAAAATGTCTGGAGTTAGCACATCTTCATTCCATGGCCGTTGACTTTGCAAAGACCGGAGCACCTGCTGCAATGCCTAGAATCTTAAAACCAAGAGAGTTTCCAGATTTCATGGAGAGGGTGGACAAGCCTATGTATGTCTCCAACAGCGTATTAGGAAAACTTTATCGTGCCATAATGGAGTCAGAATTGCAAATAAGATATAGCTTTGTGTGGTCACAGAAGCTTGCTGAAGAATCATATGATCGTAGTCTTGAAGTTGATGGTTTTGAGGCCTTCCTTGAGACGGCTTTAAGTTACAAGGAGATGTATGCGCAGAAGTTGAGCAGTTTAATGAACTTCTATGGTGCAGAGACTGAGAATGAAATGCTACTTGGCAACTTGCAAAACCGTGCTTCTTATTTGCAGCGTGATAACAGAAGATATGGTGATATGAAGGATCGGATTCTGCTCTCTGTTAGGGGCCTTCAGCGTGAAGCTAAAGAATGGTTTGAAAATAGTTGCCAACCACGTGAATATCAGCGTATGGCATCTGCATGGTATCATGTGACTTATCACCCGAGCTATTGCAATGAAAGCTTATGTTTTTTAAGCTTTCCATGGATAGTTGGTGACATCTTATTGCAAATAAAGTATGTAAACAAAGGACTTCACACATGA 3363 0.4371 MGTTTTPPQSDTVRVFNIPQSATAKDLLDFLEAAVGPSTVFALEIFSDNPNWKSRGTGRVQFESAEAKSRALSLSNLHQLLFLSHFLRLSEASDDIIFRPRHHLRNGVLYTGFMLHDHRMSVLDSWEGVTGCVMPQRRKLEFWVFHNADCYRLEIFFEDILESHGYCLGEDAKLNAILLKLKYGPKIYQKKTGPDVAAKFKGDRYRFCKENFEFVWVRTTDFSELKSIGHSTSFCWEIEEEHLASDVFASFPLYKENLRDLALEDGEEFCSPTEAVPLVKCASESKLPYEALFQLNSLVHTQKICLASVDDELIDLLGGLDEESRAVIFQKLHKMSSTCYEPLKFVKTQLHVLSTKSRKLPQSTQKRLTDNNIMSCHRALITPTKIFCLGPELETSNHVVKHFASYASDFMRITFVEENWNKLPTNAVSTDIQKGIFSKPFKTEIYKRILTILRDGIVIGTKRFEFLAFSASQLRSNSVWLFASNDNVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSMQTFEVPPQDVEIIPDIEITSEGVSYCFSDGIGKISQSFARQVAQKLKLDHSPSAFQIRFGGYKGVIAVDRHSYRKLSLRSSMLKFESKNRMLCVTKWSESMPCFLNREIISLMSTLGVKDEAFLAMQQEQLHLLGRMLTDSKAALDVLESLNAADSKSILVKMLHEFNEPNKEPYLSMMLKAYYASQLSDLKSRCRIFVPKGRVLVGCLDETGILDYGQVFVRITVTKAREKFGDESLRKVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAIYNEELEEKGWRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGSRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPEKAKSRKCLELAHLHSMAVDFAKTGAPAAMPRILKPREFPDFMERVDKPMYVSNSVLGKLYRAIMESELQIRYSFVWSQKLAEESYDRSLEVDGFEAFLETALSYKEMYAQKLSSLMNFYGAETENEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVRGLQREAKEWFENSCQPREYQRMASAWYHVTYHPSYCNESLCFLSFPWIVGDILLQIKYVNKGLHT 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01863 1120 Pfam RNA dependent RNA polymerase 381 960 IPR007855 GO:0003968
Cca11g01863 1120 SUPERFAMILY RNA-binding domain, RBD 7 98 IPR035979 GO:0003676
Cca11g01863 1120 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 9 1116 - -
Cca11g01863 1120 PANTHER RNA-DEPENDENT RNA POLYMERASE 9 1116 IPR007855 GO:0003968
Cca11g01863 1120 CDD RRM_SF 13 90 - -
Cca11g01863 1120 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 94 IPR000504 GO:0003723
Cca11g01863 1120 Gene3D - 2 98 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01863 Cca-Chr11 43791877 43797001 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01863 K11699 - gmx:100808274 1966.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01863 11 43791877 43797001 Cca11g01863 11 43791877 43797001 ECH