Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01861 ATGCGATCGTCGTGTATTCGCAGCTTCACCGTCTTCGCGGTGTTCCTCATTGCGATCCTCCCCCACGTACACGCAACAACTCCAACCTCCAAACTTCGCCTCTCTTCTCCCTTTTCAACAGCTCTCGAAACCCTACAGAAACAACTCCGCTACACTTTCAAGAGCAGCGTCGATCTTCTTCGCCGCGCCATGACCCACGCTTCCTTCTCCGAGGAGAACAACAAAGCCTTCGCCATTCTCGGCGCCACCGTCATCCAAACCTCCGTTTCCTTCCACATGCTTTCCAAAGACGTTGACGTTTCTCCCAAAGAGCTCAACCGTCGATTGTCCCAAATCACCAACGTCGAATCTTCCTGCGCCGTCGATGGAATGCGATTAGGGTTGCACAAGGTCGTTCGAGTTTCCCCCAAGACCAATTCCTCCGCCCCCGCCGTCGTTTGCACCGCCTTCCGAGCGATCTTTGCTGCTATTGCTATCGACGCTGGTAAATCCGATGACGCAGGTAACGTTTTCTGGTCCCTTCATGGCGCTGACCTAGGACTTTCCCTGCCTGTTTGA 558 0.5412 MRSSCIRSFTVFAVFLIAILPHVHATTPTSKLRLSSPFSTALETLQKQLRYTFKSSVDLLRRAMTHASFSEENNKAFAILGATVIQTSVSFHMLSKDVDVSPKELNRRLSQITNVESSCAVDGMRLGLHKVVRVSPKTNSSAPAVVCTAFRAIFAAIAIDAGKSDDAGNVFWSLHGADLGLSLPV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01861 185 Pfam Ribonuclease-III-like 58 164 IPR000999 GO:0004525|GO:0006396
Cca11g01861 185 ProSiteProfiles Ribonuclease III family domain profile. 42 162 IPR000999 GO:0004525|GO:0006396
Cca11g01861 185 Gene3D Ribonuclease III domain 40 179 IPR036389 GO:0004525|GO:0006396
Cca11g01861 185 SUPERFAMILY RNase III domain-like 36 166 IPR036389 GO:0004525|GO:0006396
Cca11g01861 185 SMART riboneu5 58 184 IPR000999 GO:0004525|GO:0006396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01861 - - gmx:100527745 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01861 11 43784963 43785976 Cca11g01861 11 43784963 43785976 ECH