Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01855 ATGGTTAACACTGGTGCAATAAGAACTGCCCTTGGAGTAGTTGGAAATATCATCTCTTTCGGTTTATTTATGTCTCCAGTACCTACATTTGTATCAATATGGAAGGCAAAATCGGTGCAAGATTTCAAGCCAGATCCTTATATTGCGACTTTGCTAAATTGTGCAGTATGGTCATTCTATGGAATGCCCTACGTAAGTGAGGATAACATTCTTGTCCTAACAATTAATGCTTTTGGCTTATGCCTAGAGCTCTTTTACATTCTCATGTTCTTAATATACTCAACCAGGGAGCAGCGGAAGAAGATCATGCTAGTCGTCTTGGGTGAAATCATTTTCGTTGCGTTACTCGTAACTCTTTTAATGACCCTTGTTCACACCCCCAAGAAAAGAAAATTGATTGTTGGACCTATATGCATAGTATTCAACATCATTATGTACGCTTCACCCTTGACGGTCATGCGACTCGTAATTCAAACGAAGAGTGTGAAGTACATGCCTTTCTTACTTTCCTTCACCAACTTCGCCAATGGAATCGCCTGGACGGTATATGCAATTCTTAAGTGGGATCCATTCGTTGTGATTCCCAATAGCTTGGGAACACTTTCTGGATTGTTGCAGCTCTCCCTCTATGCCATTTACTACAGAACAACCAACTGGAATGAAGAAACCCCTAATATTGTATGA 684 0.4035 MVNTGAIRTALGVVGNIISFGLFMSPVPTFVSIWKAKSVQDFKPDPYIATLLNCAVWSFYGMPYVSEDNILVLTINAFGLCLELFYILMFLIYSTREQRKKIMLVVLGEIIFVALLVTLLMTLVHTPKKRKLIVGPICIVFNIIMYASPLTVMRLVIQTKSVKYMPFLLSFTNFANGIAWTVYAILKWDPFVVIPNSLGTLSGLLQLSLYAIYYRTTNWNEETPNIV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01855 227 PANTHER RAG1-ACTIVATING PROTEIN 1 5 223 - -
Cca11g01855 227 Pfam Sugar efflux transporter for intercellular exchange 134 216 IPR004316 GO:0016021
Cca11g01855 227 Pfam Sugar efflux transporter for intercellular exchange 10 97 IPR004316 GO:0016021
Cca11g01855 227 Gene3D - 8 100 - -
Cca11g01855 227 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET5 5 223 - -
Cca11g01855 227 Gene3D - 130 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01855 Cca-Chr11 43674798 43681380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01855 1 194 Miscellaneous Gene Families AT5G62850 54.124 2.70e-81 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01855 K15382 - gmx:100810948 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01855 11 43674798 43681380 Cca11g01855 11 43674798 43681380 ECH