Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01828 ATGCCAAACGCGAGCGACGCCGGCGTCGAAGCCCTACGGCGGCTAAAAGCGACGGAACCACCGTCATGGCTCGTGCCGAACCCGTCGCTGTCGGAAGCTGCTCGCACTGCGTCCCAGTACTTGTTCTCTTCCCTCAAACCATTTTCCCCTAAATCGCCATTGGACCAACTCCTCGTCGACGGCTTCGACGCCGAACAGATATGGCAACAAATCGACCTCCAATCGCAGCCTCTTCTATCCACCCTTCGCCGCCGCTTGAAGCAGCTCGTTGAGAATCCCGAAGAGATTTCTCAACTGAAGGTTCCTTCGGAGGGTGGGAACAagaaggaggaagagaatcgagacgagtgggaagaagagagtgacggttttgacgaggaactggacgaggatgatgatgatgaggaagaaaatgaggacgaaggaaaggaagtagaaggagaagcgatggaggaggatgaagagagtgaggaggagaatgaagagagcgaggaggggaatgaggaaggtggtggCATTGAGGATAAATTCTTGAAAATTGATGAATTGGCTAAGTACCTAGAGAAGGAGGAAGAGAATATGGAGAATGATGAGGCAgacgaggaagacgaggatgaagatgacgacgaggaAAGTGATGAGGATGGTGATTTTGGATTTGGTGACGAGGATGAAGAAGCAGATGGCATGGAAAACGCAAGGTATGAAGACTTCTTTGGAGGTAAAAAGGAAAGGAGCTCAAAAAGAAAAGCTCAGGTACTTCAGGAATCTGAATATTCTGATGACGAAGATGACATGGAATTTGAGAAGCAGAAGAAAGGGACTGCATCTGCCCATGAAAAGGAACTGGAAAAAATTCAATCCAAGATAGAGCAAATGGAGAAAGCTAACATAGAGCCCAAAACTTGGACTATGCAGGGTGAGGTAACTGCTGCAAAAAGACCCAAGAATAGTGCATTGGAAGTTGATCTAGACTTTGAGCACAATGTAAGGCCTGCCCCTGTAATCACTGAGGAAGTTACAGCTTCAATTGAGGATATGATCAAGAAAAGGATTATTGAGGGGCATTTTAATGATGTTCAAAGGCTTCCAAAATTACCATCTAAAGCGCCTTGGGAAGTTCAAGAGTTGGATGACAATAAAAGCAAGCAGGGTCTTGCAGATATTTACGAGCAAGAATATGTTCAGAAGACAGACCCCACTTCTGCTCCATTGTCATTCAAAGATGAACAGAAGAATGAGGCAAGCATGCTGTTTAAGAGACTCTGTCTGAAGCTGGATGCCCTTTCTCATTTTAACTTTGCTCCAAAACCTGTTATAGAGGACATGTCTATTCAATCTAATGTGCCTGCTCTGGCAATGGAAGAAATTGCACCTGTGGCTGTTTCAGATGCTGCTATGTTGGCTCCTGAGGAGGTATTTGATGGCAAGGGTGATGTTAAGGAAGAAGCAGAGCTTACAAAGGCAGAAAGGAAAAGAAGGAGAGCTAATAAGAAAAGGAAATTTAAAGCCGAGGCAGTAAAAAGGACAAATAAGAAGGCACAAGAAGATGCAATTCGTAGCCAAGACAACCAAATTACTGGGTAA 1587 0.3844 MPNASDAGVEALRRLKATEPPSWLVPNPSLSEAARTASQYLFSSLKPFSPKSPLDQLLVDGFDAEQIWQQIDLQSQPLLSTLRRRLKQLVENPEEISQLKVPSEGGNKKEEENRDEWEEESDGFDEELDEDDDDEEENEDEGKEVEGEAMEEDEESEEENEESEEGNEEGGGIEDKFLKIDELAKYLEKEEENMENDEADEEDEDEDDDEESDEDGDFGFGDEDEEADGMENARYEDFFGGKKERSSKRKAQVLQESEYSDDEDDMEFEKQKKGTASAHEKELEKIQSKIEQMEKANIEPKTWTMQGEVTAAKRPKNSALEVDLDFEHNVRPAPVITEEVTASIEDMIKKRIIEGHFNDVQRLPKLPSKAPWEVQELDDNKSKQGLADIYEQEYVQKTDPTSAPLSFKDEQKNEASMLFKRLCLKLDALSHFNFAPKPVIEDMSIQSNVPALAMEEIAPVAVSDAAMLAPEEVFDGKGDVKEEAELTKAERKRRRANKKRKFKAEAVKRTNKKAQEDAIRSQDNQITG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01828 528 PIRSF snoRNP_Mpp10 11 275 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Cca11g01828 528 PIRSF snoRNP_Mpp10 206 527 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Cca11g01828 528 MobiDBLite consensus disorder prediction 170 192 - -
Cca11g01828 528 MobiDBLite consensus disorder prediction 232 257 - -
Cca11g01828 528 MobiDBLite consensus disorder prediction 492 507 - -
Cca11g01828 528 MobiDBLite consensus disorder prediction 193 231 - -
Cca11g01828 528 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 3 516 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Cca11g01828 528 Coils Coil 276 299 - -
Cca11g01828 528 Coils Coil 107 127 - -
Cca11g01828 528 MobiDBLite consensus disorder prediction 483 528 - -
Cca11g01828 528 Pfam Mpp10 protein 50 265 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Cca11g01828 528 Pfam Mpp10 protein 257 508 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Cca11g01828 528 Coils Coil 180 207 - -
Cca11g01828 528 MobiDBLite consensus disorder prediction 115 169 - -
Cca11g01828 528 Coils Coil 479 524 - -
Cca11g01828 528 Coils Coil 149 169 - -
Cca11g01828 528 MobiDBLite consensus disorder prediction 266 283 - -
Cca11g01828 528 MobiDBLite consensus disorder prediction 91 283 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01828 K14559 - gmx:100781093 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01828 11 43277208 43284097 Cca11g01828 11 43277208 43284097 ECH