Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01821 ATGACTTCGAGCATGTTGAGTGGAGAGCGAAGATGGGCCTCTTCTTCCAGAAGAGGTGGTATGACTGTTTTAGGGAAAGTTGCAGTTCCAAAACCTATCAACTTACCCAGTCAGAGGTTAGAAAATCATGGTCTGGATCCAAATGTGGAGATTGTTCCCAAGGGCACACTCAGCTGGGGTAGTAGATCATCGACTTCTACATCTAATGCATGGGGGTCTTCTTCTCTGTCCCCAAATACTGATGGTGGCACTAGTTCACCCAGTCACCTCAGTGCCCGGCCATCATCTGGTGGAAGCGGCACACGGCCTTCTACAGCTGGTAGTGACAGGGTTCTGGAGCCTACTGCTAATTCATGGGGGTCAAATTCGCGGCCTTCATCAGCATCTGGGATACTGTCTTCAAATCAGTCTTCACTGTCATCAATGCGTCCTCGTAGTGCAGAAACAAGACCTGGTAGCTCACAGCTGTCTCGGTTTGCTGAACCCTTGACTGAAAATTCAGGTGCTTGGAATGCTGCTAGGACTACAGAAAAACTGGGAGTTACACAACCCAAGAACGAAGAATTTTCTCTAAGCTCTGGAGATTTTCCAACCCTTGGTTCTGATAAAGATAAGTCTGTCCTGAATTCTGATCTGCAAGACCACAGTTCTCAAGCTGACCCTGATTCATCTTCTGGTGGACTCAGGAAAGGGATAGATGAGACCCCTGTTATTGATGATGTTCCTGTAAATGCAAATATTAAGGGTGGAACTGGAAATTCGTGGAGGAGAGATTATCAGGCTTATAATGAGGAAGGTGTGAGGCCAGGCATAGAGAAATGGCAGGGAAATTCCCAACCTTTTCCTAATGCTGGTATTCCTCCACAACACTATGATGCTTGGCATGGTCCTCCAGTAAATAACCCCCAGGGCTGCGTTTGGTTCAGGGGTCCTCCTAGTGGTCCTCCATTTGGAAATCCTGTTACTCCAGGTGGCTTTCCAATTGAACCATTTCCATATTACCGTCCACATATGCCTCCTACTGGTCTTGCTAACCCACCCCCAGTTCCCCCTCCTGGAGCTGGACCAAGAGGGCACCATAAGAATGGAGATGTCTACAGGCCTCATATGCCTGATGCCTTTATTCGCCCAGGCATTCCTATCAGACCTGGCTTTTATCCTGGTTCAATGGCCTATGAAGGATATTACAGTTCTCCAATGGGTTACTGCAATTCAAATGAAAGGGATGTTCCTTTCATGGGAATGGCTGCTGGACCGCCTGTCTATAATAGGTACCCAAATCAAACCCCCCCTGAACCTGGTAATTCACAAGGTAGATCTGGTGGATATGGTAATGCTGGGAAGCAATTGGCCTCAGAGCAAGTGGAATCTAACCATCCTCCTGATACTGCTGGACCATACAGAGTTCTTCTTAAGCAGCATGTATCAGATGGGAAAAATGAACCAACAAATTGGGAGGATTCAGAGACAACCAATACAAAATATGTTGATGGCAGGGGCCAACCAAGAATGACTGTTTGGGAGAACGAGCAGAGATCAAATTACAGAAAGAATGAGGAGATGGATTTGAGAAGTACTCATGGTGAAGAAATTTCTTCTCAGACTTCAGAAAATCTAGTATCTAGCTCTTCTGTCATTAAGGCCAAATTTTCTGAAAGCTCAGCAAACAAGAAAAAGTCCGATGATATTTCGGCAAGGAAATTTGATGGTGTTGCATCTGATGTGCTAGAAATCTCCCCGAGACCATCTGCTCCAAAAGATGCCAGTCTTATTCAAAAGATAGAGGGTTTAAATGCAAAAGCCAGGGATAATTCATCTGCTAGAATTAAAGAGGAGCATCGGAATAAATTCCATGCTGGTAATGCTCCGTTAAACCATGTGGAAAATGCAGTTGGTGCTGATGTAGTGTTTCCAGCAAGAACCCAGGCCACAGAAATCATAAATCCAGCCTACTGTGAAATGGGTGCTGCTGGTGCAGAAAAGAGTGGAACAGCCACATCCAGGCAAACTGCTCATGGAGGCAGAGGCGACCATCGTAACAAGGGAAGATCAAACAATCAAGATGCTGATGGTTGGCGAAAGAAATCTGTTATTGAAGATTCTTCAGCTTCATCAGGTGCACAGTTGGAAACATCTAATGTTCTTGTGGGTGACCATCAAATATCCGTTCAAACCTACGATAGGTCTGGGAACTATAATCAAGCAAGGCATATTGGAGAATCTGTTCAAACCAGGTCTGATCCTGCTGACAGTCATGCACAGCGTGTCAAACTGAAAGAGATAGCCAAGCAACGGACTAAGCAACTGCAGGAAGAAGAAGAGGAACGGACAAGAAAACAAAAGGCTAAAGCTCTTGCAAAGTTGGATGAGTTAAACAGACGTTCTCAAGCAGGGGATGGGTCAACTCAGAAAGAGGACATCACAAATTCTGCCATCCATAATAAGCTAGATGAATTACAACCTTCTGAGTCTACAGCTGCAGCAGTCAAATTTGGAGCTGTCAGTTCAGCTGTAAATTCTAATGCCAATACTATCTGTCAAGTAAATGACCCCAGCATTAGTAAAGTGGAAAAATCACCGATCTTGTCTGGTGAGACAGCTGTTGAGACGCTCAAGAGTTCTGGTAAAGATCCTGTTGTGATTCATAATCAATCAGTGGCCCTGCACCAAGATATTAATAATGCTGATGCTACTAATGCCTTGCATGTTCATAACAATAGCACCTCAAAGCAGAAGCGAATGAGCTATAAACAAAAGCAAAATCTTCCTTCAGAGAAAACATCAGGTGAAAAGGTTGTTTCTACCACCTCAATTACCCTGAAAGTTGAGAATGAGACAGTGATTGATTCTCTGTCTCCTGGCATTGTTGCAAATGAAGTTAGTTCAGCCTGTGGCTCAGACTTACCCATGAATTCAGCTGCTGTGGTCGAGTCTTCAGTAAACATgaaaaagaagaatatgaggaataacaaaaacaaacagaaaGTTGAAGAAAGTTCATCTTTGGCTGCACAACCATCAACATTTCCGAAAGAAACCAATCTTTCCAAAAGTCCAGTTGAAAATGATAAGTCCAGGGCTTCTGACTTTGAGTTAGATCAGGGCTCACTTCAGTCAGCACCCTTGTCTAAAGATTCAAATCAGTTTTCAGAGCAACATAGATATTTAGGAAATGAGGAATCTCATGGTAGAATGAATAGCCAGTGGAAATCGCAGCATTCTCGAAGGATGCCAAGAAATATGCAGGCAAATAGACCGGCAGAGAAATCCCACGGGACTGATGCTGTGATGTGGGCACCTGTTAAACCTCAGAACAAGAGTGAGATCATGGATGAATCGAGTGAGAAAAATAAAGTTGAGTCTGTTAATCCTGTAAAGAATGAGCAGCAGGTGCATAATTTAAAAAATAAGAGGGCAGAGATGGAGAGATATATTCCAAAACCTGTTGCAAAAGAAATGGCTCAGCAAGGAAACATCCAAGTTGCTTCATCGAGCAGTCAAGCTCCTACTGATGATAGTATTGGGAAAGTTGATTCTGGGTCACAGGGCCCCCAGGTCACTCAGCATACTAATTTAGTTTTTGGAAAAGTGGGTTCTGGAATGGAGTCTAAAAATAGAGATGCCAGGCATACAAAGCAGGGAAAAGCGCCTGGATCATGGCGGCAACGGAATCTAACAGAATCAACCAATATGCATGAGGTGCATGATGTAATGGATCATGATTCAAACTCTGAACTGAATGTTCAGAGACCAACAGAGCATCATCATGATCAGAAGTCTGAAATAAGCTTTGTGAAAGGGCAAACAAAGCATTTTAATGACTCTGGTGATGTTGATGGTTCAAACAATTCTATAAATGATTCAGCTGCTTTGGCTTCAGTTCCTGTTATTAAAGACCATGCCTCAACAGGTAGAGGGAGGCGTGCCCCTTTCAGAGGACACAAGGGTGCAGGTGGGAACCGTGATGTTGATAATAAAAAAAATTCTGGGGAGGCAGAGAAAGTTGAAACACGTATCTCATCCTCCGAGCATGGTCAACTGGATGTTGGTGTGGCTTCTAAAGAAAATCGAGGTGTTGGGGAGCGGTTGATGTCTCAATGGCAACCTAAATCTCAAGCATCTAACAATCACAGAGGAAATGTTCCAATTGATCAAAATGTTAGCCCAGTTGTTGCTGGAGCTAGTAAAAAGGATTCCACTCATGATGGAGAATCTCTTCAAGTAAGCCGTGGCAAGAGTTCCAACACTCGTCTCTCCCAACCTTCCCATGATCAATCAGTCTCTGAAAAGAGCAAGGCTGGAGAAGCTCTCCATTTTGGGAATCAAGAGAGTAAAAGAGAGAGAAAAAATGCTCCATCAAAAAGGCATCACCACTCCCCAGTTCAGGTTTCTGTTACCTCAGTTGAGCAGGCCCCAACAAGTGAGGGTCTTTTGCACGATCAACGCCCATCATCTGGGTCGGGCAAAAATATAAACCAAAATCGGTTTCGAAGAGGACATGAATCACATGGAGATTTGAAGCCACCAACCCAGGATAACAGACATTATAATCAACCTACAAACCGGGAAAGGCAGGGTTATGAGTATCACCCTGTTGGCCCATATGATGACGGCAAATTGGACAACTTTGAACGACCTAAAAATGGTAACCATGGTGGGGGAAGATTTCGGGAGAGAGGTCAAACTCATCCCCGCCGAGGCGGCGGAAACTCTTATGGACGCCAGGGCGGTCTTTGTGTCTTCCATCAGAAGCCGTACATCCATCAACTGTATTGCTGTATTCAGCCGTGTTTTCAGTATGTATTCAGCAGGGCTAGGAGCGACGAAGATGGTGTCCCCGTTTTTGTGGGGGACTGGGGGCAGAAAAGGTCACTGATTCAGCAAAGACGGAAAATACGGTGTAGGAGAAAGAAATGTGAGAAAGTGTTTGGGGGAGAGAGAGAAAATGAGATGAAAGAAATAAAAATCTGA 4971 0.441 MTSSMLSGERRWASSSRRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGSRSSTSTSNAWGSSSLSPNTDGGTSSPSHLSARPSSGGSGTRPSTAGSDRVLEPTANSWGSNSRPSSASGILSSNQSSLSSMRPRSAETRPGSSQLSRFAEPLTENSGAWNAARTTEKLGVTQPKNEEFSLSSGDFPTLGSDKDKSVLNSDLQDHSSQADPDSSSGGLRKGIDETPVIDDVPVNANIKGGTGNSWRRDYQAYNEEGVRPGIEKWQGNSQPFPNAGIPPQHYDAWHGPPVNNPQGCVWFRGPPSGPPFGNPVTPGGFPIEPFPYYRPHMPPTGLANPPPVPPPGAGPRGHHKNGDVYRPHMPDAFIRPGIPIRPGFYPGSMAYEGYYSSPMGYCNSNERDVPFMGMAAGPPVYNRYPNQTPPEPGNSQGRSGGYGNAGKQLASEQVESNHPPDTAGPYRVLLKQHVSDGKNEPTNWEDSETTNTKYVDGRGQPRMTVWENEQRSNYRKNEEMDLRSTHGEEISSQTSENLVSSSSVIKAKFSESSANKKKSDDISARKFDGVASDVLEISPRPSAPKDASLIQKIEGLNAKARDNSSARIKEEHRNKFHAGNAPLNHVENAVGADVVFPARTQATEIINPAYCEMGAAGAEKSGTATSRQTAHGGRGDHRNKGRSNNQDADGWRKKSVIEDSSASSGAQLETSNVLVGDHQISVQTYDRSGNYNQARHIGESVQTRSDPADSHAQRVKLKEIAKQRTKQLQEEEEERTRKQKAKALAKLDELNRRSQAGDGSTQKEDITNSAIHNKLDELQPSESTAAAVKFGAVSSAVNSNANTICQVNDPSISKVEKSPILSGETAVETLKSSGKDPVVIHNQSVALHQDINNADATNALHVHNNSTSKQKRMSYKQKQNLPSEKTSGEKVVSTTSITLKVENETVIDSLSPGIVANEVSSACGSDLPMNSAAVVESSVNMKKKNMRNNKNKQKVEESSSLAAQPSTFPKETNLSKSPVENDKSRASDFELDQGSLQSAPLSKDSNQFSEQHRYLGNEESHGRMNSQWKSQHSRRMPRNMQANRPAEKSHGTDAVMWAPVKPQNKSEIMDESSEKNKVESVNPVKNEQQVHNLKNKRAEMERYIPKPVAKEMAQQGNIQVASSSSQAPTDDSIGKVDSGSQGPQVTQHTNLVFGKVGSGMESKNRDARHTKQGKAPGSWRQRNLTESTNMHEVHDVMDHDSNSELNVQRPTEHHHDQKSEISFVKGQTKHFNDSGDVDGSNNSINDSAALASVPVIKDHASTGRGRRAPFRGHKGAGGNRDVDNKKNSGEAEKVETRISSSEHGQLDVGVASKENRGVGERLMSQWQPKSQASNNHRGNVPIDQNVSPVVAGASKKDSTHDGESLQVSRGKSSNTRLSQPSHDQSVSEKSKAGEALHFGNQESKRERKNAPSKRHHHSPVQVSVTSVEQAPTSEGLLHDQRPSSGSGKNINQNRFRRGHESHGDLKPPTQDNRHYNQPTNRERQGYEYHPVGPYDDGKLDNFERPKNGNHGGGRFRERGQTHPRRGGGNSYGRQGGLCVFHQKPYIHQLYCCIQPCFQYVFSRARSDEDGVPVFVGDWGQKRSLIQQRRKIRCRRKKCEKVFGGERENEMKEIKI 1656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01821 1656 MobiDBLite consensus disorder prediction 428 443 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 763 808 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1153 1220 - -
Cca11g01821 1656 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1574 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1457 1493 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1 235 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 763 794 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 515 542 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 662 711 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1494 1510 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 672 697 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 906 932 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1156 1194 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 980 1092 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 528 542 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1365 1383 - -
Cca11g01821 1656 Pfam BAT2 N-terminus 15 140 IPR009738 -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1031 1054 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 339 362 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1406 1427 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1315 1341 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 57 224 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 996 1016 - -
Cca11g01821 1656 Coils Coil 755 794 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 423 499 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1061 1079 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1534 1564 - -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 1299 1570 - -
Cca11g01821 1656 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1574 IPR038808 -
Cca11g01821 1656 MobiDBLite consensus disorder prediction 339 355 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01821 - - gmx:100809882 2603.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01821 11 43205450 43213161 Cca11g01821 11 43205450 43213161 ECH